Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22716 | 5' | -54.6 | NC_005091.1 | + | 54251 | 0.68 | 0.618535 |
Target: 5'- -gUAGCACgACGggcaaaACGCGUUgccgAUCGCGCGg -3' miRNA: 3'- aaGUCGUG-UGC------UGCGCAG----UAGUGCGC- -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 54028 | 0.68 | 0.651757 |
Target: 5'- -cCAGCGCgACGGCGCacGUUuUCACGUa -3' miRNA: 3'- aaGUCGUG-UGCUGCG--CAGuAGUGCGc -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 52786 | 0.67 | 0.662809 |
Target: 5'- aUCAGgGaCGCGGCgGCGaUCAggccgCACGCGg -3' miRNA: 3'- aAGUCgU-GUGCUG-CGC-AGUa----GUGCGC- -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 52131 | 0.75 | 0.285306 |
Target: 5'- --aAGCGCGCGGCGCG-UAUCuCGCGa -3' miRNA: 3'- aagUCGUGUGCUGCGCaGUAGuGCGC- -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 51884 | 0.7 | 0.499417 |
Target: 5'- aUCGGCAaACGACGC-UCGUCguaacccaucagGCGCGg -3' miRNA: 3'- aAGUCGUgUGCUGCGcAGUAG------------UGCGC- -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 51755 | 0.66 | 0.749237 |
Target: 5'- cUUCAGCACuuCG-CGCGaC-UCGCGCa -3' miRNA: 3'- -AAGUCGUGu-GCuGCGCaGuAGUGCGc -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 50821 | 0.68 | 0.640688 |
Target: 5'- aUCaAGCGUGCGGC-CGUCGUgCGCGCGg -3' miRNA: 3'- aAG-UCGUGUGCUGcGCAGUA-GUGCGC- -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 49271 | 0.69 | 0.552656 |
Target: 5'- -gCAGcCACACGAgGCGcaguUCGUCGgGCGu -3' miRNA: 3'- aaGUC-GUGUGCUgCGC----AGUAGUgCGC- -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 49225 | 0.67 | 0.695746 |
Target: 5'- gUCAGCACGCGAUGgG-CugcUUugGCa -3' miRNA: 3'- aAGUCGUGUGCUGCgCaGu--AGugCGc -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 47086 | 0.66 | 0.75962 |
Target: 5'- cUUCAGCgACAUGAUggGCGUCAUC-CuCGg -3' miRNA: 3'- -AAGUCG-UGUGCUG--CGCAGUAGuGcGC- -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 41781 | 0.67 | 0.681524 |
Target: 5'- gUUCgAGCGCgugAUGACGCGUCGUgugcugaagaucaaCACGCc -3' miRNA: 3'- -AAG-UCGUG---UGCUGCGCAGUA--------------GUGCGc -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 41691 | 1.06 | 0.002068 |
Target: 5'- cUUCAGCACACGACGCGUCAUCACGCGc -3' miRNA: 3'- -AAGUCGUGUGCUGCGCAGUAGUGCGC- -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 41636 | 0.66 | 0.738733 |
Target: 5'- -aCAGCAUguACGcACGCGcCAUCGUGCa -3' miRNA: 3'- aaGUCGUG--UGC-UGCGCaGUAGUGCGc -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 39363 | 0.7 | 0.53112 |
Target: 5'- -gCAGCACACGGCGUacaugucccauGUCcugAUCcGCGCGg -3' miRNA: 3'- aaGUCGUGUGCUGCG-----------CAG---UAG-UGCGC- -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 36966 | 0.71 | 0.438754 |
Target: 5'- aUCGGCGCgaugAUGGCGCG-C-UCGCGCGa -3' miRNA: 3'- aAGUCGUG----UGCUGCGCaGuAGUGCGC- -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 36874 | 0.72 | 0.400732 |
Target: 5'- gUCGGUgucGCGCGAgCGCGccaUCAUCGCGCc -3' miRNA: 3'- aAGUCG---UGUGCU-GCGC---AGUAGUGCGc -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 36453 | 0.72 | 0.419482 |
Target: 5'- aUCGGCGCACGAUacaGCGUCG-C-CGCa -3' miRNA: 3'- aAGUCGUGUGCUG---CGCAGUaGuGCGc -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 36389 | 0.68 | 0.651757 |
Target: 5'- gUCGGCACgccGCGACGC----UCGCGCa -3' miRNA: 3'- aAGUCGUG---UGCUGCGcaguAGUGCGc -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 31839 | 0.69 | 0.552656 |
Target: 5'- -gCAGC-CACGuucgccCGCGUCGUCACGa- -3' miRNA: 3'- aaGUCGuGUGCu-----GCGCAGUAGUGCgc -5' |
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22716 | 5' | -54.6 | NC_005091.1 | + | 29574 | 0.66 | 0.72812 |
Target: 5'- aUCGGCGCGCGccaGCGUCcuacGUCGCuCGc -3' miRNA: 3'- aAGUCGUGUGCug-CGCAG----UAGUGcGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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