miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2272 5' -52.6 NC_001405.1 + 26556 1.13 0.000459
Target:  5'- aAGAGCAACAACAGCGCCAAGGCUACCg -3'
miRNA:   3'- -UCUCGUUGUUGUCGCGGUUCCGAUGG- -5'
2272 5' -52.6 NC_001405.1 + 11075 0.74 0.268001
Target:  5'- aAGAGCAAgAGCAGCGgCAgacaugcaGGGC-ACCc -3'
miRNA:   3'- -UCUCGUUgUUGUCGCgGU--------UCCGaUGG- -5'
2272 5' -52.6 NC_001405.1 + 2148 0.74 0.275345
Target:  5'- aGGAGCAACAGCAGgaggaaGCCA-GGCgGCg -3'
miRNA:   3'- -UCUCGUUGUUGUCg-----CGGUuCCGaUGg -5'
2272 5' -52.6 NC_001405.1 + 14182 0.74 0.275345
Target:  5'- gAGAGCGugGugagcGCGGCGCCAGuGGCgGCg -3'
miRNA:   3'- -UCUCGUugU-----UGUCGCGGUU-CCGaUGg -5'
2272 5' -52.6 NC_001405.1 + 26755 0.74 0.282848
Target:  5'- cGGcAGCAACAGCAGCGgUCAcacagaagcaaAGGCgACCg -3'
miRNA:   3'- -UC-UCGUUGUUGUCGC-GGU-----------UCCGaUGG- -5'
2272 5' -52.6 NC_001405.1 + 33195 0.73 0.331272
Target:  5'- uAGGGCGguggugcuGCAGCAGCGCgCGAauaaacuGCUGCCg -3'
miRNA:   3'- -UCUCGU--------UGUUGUCGCG-GUUc------CGAUGG- -5'
2272 5' -52.6 NC_001405.1 + 9417 0.72 0.385526
Target:  5'- -cGGCGACGACGGCGCaccggGAGGCggucgACa -3'
miRNA:   3'- ucUCGUUGUUGUCGCGg----UUCCGa----UGg -5'
2272 5' -52.6 NC_001405.1 + 13577 0.71 0.40487
Target:  5'- uAGAGUuGCAACAGCGCgagcaggcaGAGGCggcGCUg -3'
miRNA:   3'- -UCUCGuUGUUGUCGCGg--------UUCCGa--UGG- -5'
2272 5' -52.6 NC_001405.1 + 12669 0.71 0.414769
Target:  5'- uGGcGCAGCGugAGCGCgcgcagcagCAGGGCaACCu -3'
miRNA:   3'- -UCuCGUUGUugUCGCG---------GUUCCGaUGG- -5'
2272 5' -52.6 NC_001405.1 + 3836 0.71 0.424815
Target:  5'- -cAGCGGCugaAGCGGCgGCgGAGGCUGCa -3'
miRNA:   3'- ucUCGUUG---UUGUCG-CGgUUCCGAUGg -5'
2272 5' -52.6 NC_001405.1 + 8659 0.7 0.466397
Target:  5'- aGGAGCugguGCuGC-GCGCgGAGGUUGCUg -3'
miRNA:   3'- -UCUCGu---UGuUGuCGCGgUUCCGAUGG- -5'
2272 5' -52.6 NC_001405.1 + 11711 0.7 0.47712
Target:  5'- -aAGgAACAGCuGCGCCAugagcGGCUugCu -3'
miRNA:   3'- ucUCgUUGUUGuCGCGGUu----CCGAugG- -5'
2272 5' -52.6 NC_001405.1 + 19225 0.69 0.498921
Target:  5'- uAGAGCGuuguaGGCAGUGCCGgaguaGGGCUuaaaaguagGCCc -3'
miRNA:   3'- -UCUCGUug---UUGUCGCGGU-----UCCGA---------UGG- -5'
2272 5' -52.6 NC_001405.1 + 11793 0.69 0.509987
Target:  5'- cGAGCAGcCAGCGGC-CCucGGGCUcuACUa -3'
miRNA:   3'- uCUCGUU-GUUGUCGcGGu-UCCGA--UGG- -5'
2272 5' -52.6 NC_001405.1 + 9286 0.69 0.529029
Target:  5'- uGAGCucgGCGACAgugucgcgcaccucGCGCUcaAAGGCUACa -3'
miRNA:   3'- uCUCGu--UGUUGU--------------CGCGG--UUCCGAUGg -5'
2272 5' -52.6 NC_001405.1 + 26522 0.69 0.543764
Target:  5'- -cGGCGAacaGGCAGUGCCGGcGGC-GCCu -3'
miRNA:   3'- ucUCGUUg--UUGUCGCGGUU-CCGaUGG- -5'
2272 5' -52.6 NC_001405.1 + 5531 0.69 0.543764
Target:  5'- aAGGGCaAGCuGC-GCGCCAAGG--GCCa -3'
miRNA:   3'- -UCUCG-UUGuUGuCGCGGUUCCgaUGG- -5'
2272 5' -52.6 NC_001405.1 + 15501 0.69 0.55519
Target:  5'- cAGAuCAGCAACuuuccgguggugGGCGCCGAGcuGUUGCCc -3'
miRNA:   3'- -UCUcGUUGUUG------------UCGCGGUUC--CGAUGG- -5'
2272 5' -52.6 NC_001405.1 + 21724 0.69 0.55519
Target:  5'- aAGaAGCAagcaacaucaACAACAGCuGCCGccauGGGCU-CCa -3'
miRNA:   3'- -UC-UCGU----------UGUUGUCG-CGGU----UCCGAuGG- -5'
2272 5' -52.6 NC_001405.1 + 6686 0.69 0.55519
Target:  5'- uGGGguGgGugAGCGCgGAGGCguacaUGCCg -3'
miRNA:   3'- uCUCguUgUugUCGCGgUUCCG-----AUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.