Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2272 | 5' | -52.6 | NC_001405.1 | + | 855 | 0.66 | 0.728944 |
Target: 5'- cGAGCAGCcggAGCAGagaGCCuuGGGUccgguuucuaUGCCa -3' miRNA: 3'- uCUCGUUG---UUGUCg--CGGu-UCCG----------AUGG- -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 2148 | 0.74 | 0.275345 |
Target: 5'- aGGAGCAACAGCAGgaggaaGCCA-GGCgGCg -3' miRNA: 3'- -UCUCGUUGUUGUCg-----CGGUuCCGaUGg -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 3836 | 0.71 | 0.424815 |
Target: 5'- -cAGCGGCugaAGCGGCgGCgGAGGCUGCa -3' miRNA: 3'- ucUCGUUG---UUGUCG-CGgUUCCGAUGg -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 5450 | 0.67 | 0.671587 |
Target: 5'- cAGGGCGAagacCGGCAGCGCUucaGC-ACCa -3' miRNA: 3'- -UCUCGUU----GUUGUCGCGGuucCGaUGG- -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 5531 | 0.69 | 0.543764 |
Target: 5'- aAGGGCaAGCuGC-GCGCCAAGG--GCCa -3' miRNA: 3'- -UCUCG-UUGuUGuCGCGGUUCCgaUGG- -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 6423 | 0.67 | 0.62486 |
Target: 5'- cAGGGUGACAAgguCAaCGCUGGuGGCUACCu -3' miRNA: 3'- -UCUCGUUGUU---GUcGCGGUU-CCGAUGG- -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 6532 | 0.66 | 0.733438 |
Target: 5'- aAGGGCGGCcgccucugcuggaccAACgAGCGCCuacgcggaGAGGUaGCCa -3' miRNA: 3'- -UCUCGUUG---------------UUG-UCGCGG--------UUCCGaUGG- -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 6686 | 0.69 | 0.55519 |
Target: 5'- uGGGguGgGugAGCGCgGAGGCguacaUGCCg -3' miRNA: 3'- uCUCguUgUugUCGCGgUUCCG-----AUGG- -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 6822 | 0.66 | 0.706234 |
Target: 5'- gGGAGCGAgGAgguCGG-GaCCGAGGUUGCUa -3' miRNA: 3'- -UCUCGUUgUU---GUCgC-GGUUCCGAUGG- -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 8659 | 0.7 | 0.466397 |
Target: 5'- aGGAGCugguGCuGC-GCGCgGAGGUUGCUg -3' miRNA: 3'- -UCUCGu---UGuUGuCGCGgUUCCGAUGG- -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 9286 | 0.69 | 0.529029 |
Target: 5'- uGAGCucgGCGACAgugucgcgcaccucGCGCUcaAAGGCUACa -3' miRNA: 3'- uCUCGu--UGUUGU--------------CGCGG--UUCCGAUGg -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 9417 | 0.72 | 0.385526 |
Target: 5'- -cGGCGACGACGGCGCaccggGAGGCggucgACa -3' miRNA: 3'- ucUCGUUGUUGUCGCGg----UUCCGa----UGg -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 9469 | 0.67 | 0.668096 |
Target: 5'- --cGCGGCGACGGCGCauggucucggugacGGCgcgGCCg -3' miRNA: 3'- ucuCGUUGUUGUCGCGguu-----------CCGa--UGG- -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 9733 | 0.66 | 0.728944 |
Target: 5'- cGGGCGGCAGCggguGGCGgUCGGGGUUGu- -3' miRNA: 3'- uCUCGUUGUUG----UCGC-GGUUCCGAUgg -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 10331 | 0.67 | 0.647088 |
Target: 5'- aAGuGCGGCGGCGGCuggcgguagagggGCCAgcguaGGGUgGCCg -3' miRNA: 3'- -UCuCGUUGUUGUCG-------------CGGU-----UCCGaUGG- -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 10827 | 0.66 | 0.683195 |
Target: 5'- uAGcGCAGCAGCcgccGCGCCuggAAGGaaGCCa -3' miRNA: 3'- -UCuCGUUGUUGu---CGCGG---UUCCgaUGG- -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 11075 | 0.74 | 0.268001 |
Target: 5'- aAGAGCAAgAGCAGCGgCAgacaugcaGGGC-ACCc -3' miRNA: 3'- -UCUCGUUgUUGUCGCgGU--------UCCGaUGG- -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 11256 | 0.66 | 0.693596 |
Target: 5'- uGAGCGACAcccaaggguGCAGCugaagcgugacacGCgCGAGGCguacgUGCCg -3' miRNA: 3'- uCUCGUUGU---------UGUCG-------------CG-GUUCCG-----AUGG- -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 11711 | 0.7 | 0.47712 |
Target: 5'- -aAGgAACAGCuGCGCCAugagcGGCUugCu -3' miRNA: 3'- ucUCgUUGUUGuCGCGGUu----CCGAugG- -5' |
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2272 | 5' | -52.6 | NC_001405.1 | + | 11793 | 0.69 | 0.509987 |
Target: 5'- cGAGCAGcCAGCGGC-CCucGGGCUcuACUa -3' miRNA: 3'- uCUCGUU-GUUGUCGcGGu-UCCGA--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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