miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22720 3' -55.5 NC_005091.1 + 49506 0.66 0.715824
Target:  5'- --cGAGCgGCA-GGCAGaACGCGC-Ca -3'
miRNA:   3'- acaCUCGgUGUaCCGUC-UGCGUGaGc -5'
22720 3' -55.5 NC_005091.1 + 17017 0.66 0.705055
Target:  5'- cGUGAGCCA-GUGGguGAaggugaaguCGUACUUc -3'
miRNA:   3'- aCACUCGGUgUACCguCU---------GCGUGAGc -5'
22720 3' -55.5 NC_005091.1 + 48970 0.66 0.694216
Target:  5'- uUG-GGGCU---UGGCGGGCGCGCUa- -3'
miRNA:   3'- -ACaCUCGGuguACCGUCUGCGUGAgc -5'
22720 3' -55.5 NC_005091.1 + 4838 0.66 0.672366
Target:  5'- cGUGcAGUgACGUGGC-GAUcCGCUCGg -3'
miRNA:   3'- aCAC-UCGgUGUACCGuCUGcGUGAGC- -5'
22720 3' -55.5 NC_005091.1 + 51580 0.67 0.628294
Target:  5'- cGUGcGUCGCGUGaCGGGCGCGCa-- -3'
miRNA:   3'- aCACuCGGUGUACcGUCUGCGUGagc -5'
22720 3' -55.5 NC_005091.1 + 46159 0.67 0.617259
Target:  5'- cGUGGGUCaACGUcGGCAuGGCGCugUUu -3'
miRNA:   3'- aCACUCGG-UGUA-CCGU-CUGCGugAGc -5'
22720 3' -55.5 NC_005091.1 + 53274 0.67 0.606238
Target:  5'- ----cGCCGCAcuuugGGCGGAUGCAC-CGg -3'
miRNA:   3'- acacuCGGUGUa----CCGUCUGCGUGaGC- -5'
22720 3' -55.5 NC_005091.1 + 44532 0.69 0.530195
Target:  5'- -uUGAGCgGCAcUGGCGGGUGCAC-CGg -3'
miRNA:   3'- acACUCGgUGU-ACCGUCUGCGUGaGC- -5'
22720 3' -55.5 NC_005091.1 + 26085 0.69 0.519585
Target:  5'- cGUGcaGGgCGCGauuaaccuugcGGCGGGCGCACUCGa -3'
miRNA:   3'- aCAC--UCgGUGUa----------CCGUCUGCGUGAGC- -5'
22720 3' -55.5 NC_005091.1 + 38131 0.69 0.519585
Target:  5'- ----cGUCGCAUGGUGGACGCGCa-- -3'
miRNA:   3'- acacuCGGUGUACCGUCUGCGUGagc -5'
22720 3' -55.5 NC_005091.1 + 2034 0.76 0.203457
Target:  5'- gGUGAGCCGCAggggacUGGCGacgagaaguucGACGCACUgGu -3'
miRNA:   3'- aCACUCGGUGU------ACCGU-----------CUGCGUGAgC- -5'
22720 3' -55.5 NC_005091.1 + 44272 1.1 0.000783
Target:  5'- aUGUGAGCCACAUGGCAGACGCACUCGg -3'
miRNA:   3'- -ACACUCGGUGUACCGUCUGCGUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.