miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22721 3' -59.8 NC_005091.1 + 44434 1.14 0.000194
Target:  5'- aGGCCGGGAACGCUUGCCGGUGCACCCg -3'
miRNA:   3'- -CCGGCCCUUGCGAACGGCCACGUGGG- -5'
22721 3' -59.8 NC_005091.1 + 10031 0.78 0.082313
Target:  5'- aGCCGGGGcCGUaauacUGCCGGUGCucGCCCu -3'
miRNA:   3'- cCGGCCCUuGCGa----ACGGCCACG--UGGG- -5'
22721 3' -59.8 NC_005091.1 + 11017 0.76 0.127182
Target:  5'- cGCCGGGGuCGCuUUGCCGGgcgGCuuCCa -3'
miRNA:   3'- cCGGCCCUuGCG-AACGGCCa--CGugGG- -5'
22721 3' -59.8 NC_005091.1 + 34347 0.76 0.127182
Target:  5'- cGGCCGGccGCGCUUGUCGuacUGCACgCCg -3'
miRNA:   3'- -CCGGCCcuUGCGAACGGCc--ACGUG-GG- -5'
22721 3' -59.8 NC_005091.1 + 43995 0.72 0.216855
Target:  5'- aGCUGGGAgaaguagacGCGCUUcucgauaugcaggucGCCGGgaagcgacUGCGCCCa -3'
miRNA:   3'- cCGGCCCU---------UGCGAA---------------CGGCC--------ACGUGGG- -5'
22721 3' -59.8 NC_005091.1 + 1240 0.72 0.231563
Target:  5'- cGCCGGGAugGCUgcacGCCaGUuagcguaauGCGCCUu -3'
miRNA:   3'- cCGGCCCUugCGAa---CGGcCA---------CGUGGG- -5'
22721 3' -59.8 NC_005091.1 + 17553 0.71 0.255821
Target:  5'- cGGCCGGGAGCGU--GUCGacGCAaCCCc -3'
miRNA:   3'- -CCGGCCCUUGCGaaCGGCcaCGU-GGG- -5'
22721 3' -59.8 NC_005091.1 + 15169 0.7 0.289026
Target:  5'- cGGaUCGGGGACGagaccgGCCGcGUGCguugACCCg -3'
miRNA:   3'- -CC-GGCCCUUGCgaa---CGGC-CACG----UGGG- -5'
22721 3' -59.8 NC_005091.1 + 4683 0.7 0.289026
Target:  5'- gGGCCGGGGcCGUc-GCUGGUaGCucCCCg -3'
miRNA:   3'- -CCGGCCCUuGCGaaCGGCCA-CGu-GGG- -5'
22721 3' -59.8 NC_005091.1 + 16106 0.7 0.30979
Target:  5'- cGGCCGGcGGcagcacgACGCUUGUCGGccugaccgaUGUAgCCg -3'
miRNA:   3'- -CCGGCC-CU-------UGCGAACGGCC---------ACGUgGG- -5'
22721 3' -59.8 NC_005091.1 + 28342 0.7 0.310525
Target:  5'- aGCCGccAGCGCgucGCCGGuUGCACCg -3'
miRNA:   3'- cCGGCccUUGCGaa-CGGCC-ACGUGGg -5'
22721 3' -59.8 NC_005091.1 + 27423 0.7 0.314969
Target:  5'- cGGCUGGGGGCGCU--CCGGgggaucacgaaagGCuugauCCCg -3'
miRNA:   3'- -CCGGCCCUUGCGAacGGCCa------------CGu----GGG- -5'
22721 3' -59.8 NC_005091.1 + 53174 0.7 0.317957
Target:  5'- cGCgCGGGcGCGagcCUU-CCGGUGCAUCCg -3'
miRNA:   3'- cCG-GCCCuUGC---GAAcGGCCACGUGGG- -5'
22721 3' -59.8 NC_005091.1 + 30244 0.7 0.317957
Target:  5'- aGGCCGGG-GCGUcgaaGCCGGcgaaGC-CCCg -3'
miRNA:   3'- -CCGGCCCuUGCGaa--CGGCCa---CGuGGG- -5'
22721 3' -59.8 NC_005091.1 + 43723 0.69 0.34105
Target:  5'- aGGuCCGGGcauuucuCGCUUgGCagaaaGGUGCGCCg -3'
miRNA:   3'- -CC-GGCCCuu-----GCGAA-CGg----CCACGUGGg -5'
22721 3' -59.8 NC_005091.1 + 34655 0.69 0.357107
Target:  5'- cGCCGGGGaugACGUUgaUGUCGG-GCAUCg -3'
miRNA:   3'- cCGGCCCU---UGCGA--ACGGCCaCGUGGg -5'
22721 3' -59.8 NC_005091.1 + 17927 0.68 0.40838
Target:  5'- cGGCCGauagcGGAACGUUUGUCGccgugGCGCgCa -3'
miRNA:   3'- -CCGGC-----CCUUGCGAACGGCca---CGUGgG- -5'
22721 3' -59.8 NC_005091.1 + 32104 0.68 0.417362
Target:  5'- cGGCCGGGuccGCGCcgacuuCCGGguUGCugCUg -3'
miRNA:   3'- -CCGGCCCu--UGCGaac---GGCC--ACGugGG- -5'
22721 3' -59.8 NC_005091.1 + 51345 0.68 0.417362
Target:  5'- --gCGcGGAACGcCUUGCgCGGguucgugauuUGCGCCCg -3'
miRNA:   3'- ccgGC-CCUUGC-GAACG-GCC----------ACGUGGG- -5'
22721 3' -59.8 NC_005091.1 + 45328 0.67 0.426464
Target:  5'- -uCCGGGcgcAACGCgcgGCCGGUagacgacagaGCGCCg -3'
miRNA:   3'- ccGGCCC---UUGCGaa-CGGCCA----------CGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.