Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22721 | 5' | -52.3 | NC_005091.1 | + | 44472 | 1.12 | 0.001547 |
Target: 5'- uCAAAAUGAAGCCCGGACGAACCGGGCu -3' miRNA: 3'- -GUUUUACUUCGGGCCUGCUUGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 4214 | 0.78 | 0.259961 |
Target: 5'- gAGGAUGAAGUgCGG-CGuGCCGGGCc -3' miRNA: 3'- gUUUUACUUCGgGCCuGCuUGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 44559 | 0.76 | 0.36002 |
Target: 5'- -----aGAAGCCCGGuuCGu-CCGGGCu -3' miRNA: 3'- guuuuaCUUCGGGCCu-GCuuGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 13046 | 0.74 | 0.424046 |
Target: 5'- -------cGGCCCGGACGAcCCGuGGCc -3' miRNA: 3'- guuuuacuUCGGGCCUGCUuGGC-CCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 16998 | 0.74 | 0.453493 |
Target: 5'- -----cGgcGUCUGGugGGGCUGGGCg -3' miRNA: 3'- guuuuaCuuCGGGCCugCUUGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 53342 | 0.72 | 0.547763 |
Target: 5'- --------cGCUCGGcuACGAGCCGGGCc -3' miRNA: 3'- guuuuacuuCGGGCC--UGCUUGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 48175 | 0.72 | 0.558665 |
Target: 5'- gGAAggGAAGCCUuauaGGacaagGCGAGCCGGGg -3' miRNA: 3'- gUUUuaCUUCGGG----CC-----UGCUUGGCCCg -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 33721 | 0.72 | 0.580643 |
Target: 5'- --uGGUGAAGUCCcGAUGccGCCGGGCc -3' miRNA: 3'- guuUUACUUCGGGcCUGCu-UGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 54910 | 0.72 | 0.580643 |
Target: 5'- --uGAUGGcgccGCCCGGACGggUCGGa- -3' miRNA: 3'- guuUUACUu---CGGGCCUGCuuGGCCcg -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 29464 | 0.72 | 0.580643 |
Target: 5'- ----cUGu--CCCGGuucgGCGAACCGGGCg -3' miRNA: 3'- guuuuACuucGGGCC----UGCUUGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 49087 | 0.71 | 0.591702 |
Target: 5'- gUAAAA--AAGCCCGacACGAugGCCGGGCg -3' miRNA: 3'- -GUUUUacUUCGGGCc-UGCU--UGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 7740 | 0.71 | 0.62505 |
Target: 5'- gCGAAAUGGAGauguCCCGGccguCGAugACCGGGa -3' miRNA: 3'- -GUUUUACUUC----GGGCCu---GCU--UGGCCCg -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 19927 | 0.7 | 0.64733 |
Target: 5'- ---cAUGAAGUUCGaGcGCGAGCCGGGa -3' miRNA: 3'- guuuUACUUCGGGC-C-UGCUUGGCCCg -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 43091 | 0.7 | 0.680616 |
Target: 5'- cCAAGGUcgccuuGCCCGGcgcuuucgcgACGAGCgGGGCg -3' miRNA: 3'- -GUUUUAcuu---CGGGCC----------UGCUUGgCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 45575 | 0.69 | 0.711304 |
Target: 5'- cCGAuGUGAAGCuggCCGGcgucggcuuccugACGAagaacacGCCGGGCg -3' miRNA: 3'- -GUUuUACUUCG---GGCC-------------UGCU-------UGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 32593 | 0.69 | 0.73499 |
Target: 5'- -----cGcAGGCUCaGACGuACCGGGCa -3' miRNA: 3'- guuuuaC-UUCGGGcCUGCuUGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 29545 | 0.69 | 0.745595 |
Target: 5'- --------cGCCCGGuucgcCGAACCGGGa -3' miRNA: 3'- guuuuacuuCGGGCCu----GCUUGGCCCg -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 10914 | 0.69 | 0.745595 |
Target: 5'- gCAAAAaGAAGCCCcGGCGGaaACCcgucgGGGCc -3' miRNA: 3'- -GUUUUaCUUCGGGcCUGCU--UGG-----CCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 6606 | 0.69 | 0.756081 |
Target: 5'- gCGGAuUGAGGCCaggcacgaugUGGAuCGAGUCGGGCg -3' miRNA: 3'- -GUUUuACUUCGG----------GCCU-GCUUGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 9771 | 0.68 | 0.770542 |
Target: 5'- ----cUGAAGgCCCGGuCGAugagucgcuggcccaGCCGGGa -3' miRNA: 3'- guuuuACUUC-GGGCCuGCU---------------UGGCCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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