miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22721 5' -52.3 NC_005091.1 + 44472 1.12 0.001547
Target:  5'- uCAAAAUGAAGCCCGGACGAACCGGGCu -3'
miRNA:   3'- -GUUUUACUUCGGGCCUGCUUGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 30483 0.66 0.860373
Target:  5'- gCGGAagGAAGCguUCGGcUGGGCCGGGa -3'
miRNA:   3'- -GUUUuaCUUCG--GGCCuGCUUGGCCCg -5'
22721 5' -52.3 NC_005091.1 + 6023 0.67 0.851926
Target:  5'- aCGAGGgc-GGCgCGGACGu-UCGGGCg -3'
miRNA:   3'- -GUUUUacuUCGgGCCUGCuuGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 14123 0.67 0.825205
Target:  5'- -----aGuAGCCgGGAgGucGCCGGGCu -3'
miRNA:   3'- guuuuaCuUCGGgCCUgCu-UGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 10010 0.67 0.821495
Target:  5'- uCGAAcUGGAaCCCGGcacgacgGCGAccacguuguucaucGCCGGGCg -3'
miRNA:   3'- -GUUUuACUUcGGGCC-------UGCU--------------UGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 44432 0.68 0.796613
Target:  5'- -----aGAGGCCgGGaACGcuuGCCGGuGCa -3'
miRNA:   3'- guuuuaCUUCGGgCC-UGCu--UGGCC-CG- -5'
22721 5' -52.3 NC_005091.1 + 52425 0.68 0.786716
Target:  5'- gCAAGcAUGGuuAGCUCcaguggaaucaGGGCGcGCCGGGCg -3'
miRNA:   3'- -GUUU-UACU--UCGGG-----------CCUGCuUGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 10914 0.69 0.745595
Target:  5'- gCAAAAaGAAGCCCcGGCGGaaACCcgucgGGGCc -3'
miRNA:   3'- -GUUUUaCUUCGGGcCUGCU--UGG-----CCCG- -5'
22721 5' -52.3 NC_005091.1 + 45575 0.69 0.711304
Target:  5'- cCGAuGUGAAGCuggCCGGcgucggcuuccugACGAagaacacGCCGGGCg -3'
miRNA:   3'- -GUUuUACUUCG---GGCC-------------UGCU-------UGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 43091 0.7 0.680616
Target:  5'- cCAAGGUcgccuuGCCCGGcgcuuucgcgACGAGCgGGGCg -3'
miRNA:   3'- -GUUUUAcuu---CGGGCC----------UGCUUGgCCCG- -5'
22721 5' -52.3 NC_005091.1 + 49087 0.71 0.591702
Target:  5'- gUAAAA--AAGCCCGacACGAugGCCGGGCg -3'
miRNA:   3'- -GUUUUacUUCGGGCc-UGCU--UGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 29464 0.72 0.580643
Target:  5'- ----cUGu--CCCGGuucgGCGAACCGGGCg -3'
miRNA:   3'- guuuuACuucGGGCC----UGCUUGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 53342 0.72 0.547763
Target:  5'- --------cGCUCGGcuACGAGCCGGGCc -3'
miRNA:   3'- guuuuacuuCGGGCC--UGCUUGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 10060 0.67 0.851069
Target:  5'- -cAGGUGcuuGGCugaCCGGACGAggaucgaGCCGGGg -3'
miRNA:   3'- guUUUACu--UCG---GGCCUGCU-------UGGCCCg -5'
22721 5' -52.3 NC_005091.1 + 51871 0.67 0.851926
Target:  5'- --------cGCCCGGAC--GCCGGGa -3'
miRNA:   3'- guuuuacuuCGGGCCUGcuUGGCCCg -5'
22721 5' -52.3 NC_005091.1 + 33966 0.67 0.851926
Target:  5'- ----cUGAAGCC--GAUGGguacGCCGGGCg -3'
miRNA:   3'- guuuuACUUCGGgcCUGCU----UGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 29485 0.66 0.860373
Target:  5'- ---cGUGGucaAGCCCGGACGcACCaaGCa -3'
miRNA:   3'- guuuUACU---UCGGGCCUGCuUGGccCG- -5'
22721 5' -52.3 NC_005091.1 + 30729 0.66 0.868576
Target:  5'- -----cGAcguGGUCgGGACGGGuCCGGGUc -3'
miRNA:   3'- guuuuaCU---UCGGgCCUGCUU-GGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 17740 0.66 0.876527
Target:  5'- -----cGAGGauaCCGaccucauCGAGCCGGGCa -3'
miRNA:   3'- guuuuaCUUCg--GGCcu-----GCUUGGCCCG- -5'
22721 5' -52.3 NC_005091.1 + 4214 0.78 0.259961
Target:  5'- gAGGAUGAAGUgCGG-CGuGCCGGGCc -3'
miRNA:   3'- gUUUUACUUCGgGCCuGCuUGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.