miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22725 3' -40.6 NC_005091.1 + 639 0.71 0.999227
Target:  5'- cGCGCUGaacGCGGAGAAuCGAccGGGCa -3'
miRNA:   3'- -CGCGAUac-UGCCUUUUuGCUuuUUUG- -5'
22725 3' -40.6 NC_005091.1 + 1014 0.66 1
Target:  5'- cGCGCUGcucGGCGucAAuACGAcgGAACg -3'
miRNA:   3'- -CGCGAUa--CUGCcuUUuUGCUuuUUUG- -5'
22725 3' -40.6 NC_005091.1 + 1441 0.74 0.993102
Target:  5'- cGCGCUuccACGGGAAGaacGCGAAGAAGu -3'
miRNA:   3'- -CGCGAuacUGCCUUUU---UGCUUUUUUg -5'
22725 3' -40.6 NC_005091.1 + 1712 0.66 0.999999
Target:  5'- aGCGCgucaaaGGGuuacuugccGAAGCGAAGGAGCa -3'
miRNA:   3'- -CGCGauacugCCU---------UUUUGCUUUUUUG- -5'
22725 3' -40.6 NC_005091.1 + 3056 0.7 0.99972
Target:  5'- cGCGUgcUGACGGAGcagcucCGAAAAAGg -3'
miRNA:   3'- -CGCGauACUGCCUUuuu---GCUUUUUUg -5'
22725 3' -40.6 NC_005091.1 + 3552 0.68 0.999989
Target:  5'- aCGCcGUGACGGAc--GCGAAccuGCg -3'
miRNA:   3'- cGCGaUACUGCCUuuuUGCUUuuuUG- -5'
22725 3' -40.6 NC_005091.1 + 4822 0.67 0.999999
Target:  5'- cGCGCUcgGcGCGGcgGcAACGGucAAGCg -3'
miRNA:   3'- -CGCGAuaC-UGCCuuU-UUGCUuuUUUG- -5'
22725 3' -40.6 NC_005091.1 + 5495 0.7 0.999881
Target:  5'- cGCGCUGccgcaggaacUGACGGAAAucGCGuuu-AACc -3'
miRNA:   3'- -CGCGAU----------ACUGCCUUUu-UGCuuuuUUG- -5'
22725 3' -40.6 NC_005091.1 + 6456 0.66 1
Target:  5'- cGCGCUGcgcUGAaGGAAGcaggcgcGACGGAuggcGAACg -3'
miRNA:   3'- -CGCGAU---ACUgCCUUU-------UUGCUUu---UUUG- -5'
22725 3' -40.6 NC_005091.1 + 6885 0.67 0.999996
Target:  5'- cGCGCa---GCGGAAGcgggcgcGACGAAGAAAg -3'
miRNA:   3'- -CGCGauacUGCCUUU-------UUGCUUUUUUg -5'
22725 3' -40.6 NC_005091.1 + 15225 0.71 0.999393
Target:  5'- gGCGCaacGGCGGAAcGACGAAGu--- -3'
miRNA:   3'- -CGCGauaCUGCCUUuUUGCUUUuuug -5'
22725 3' -40.6 NC_005091.1 + 16649 0.68 0.999989
Target:  5'- gGCGUgggGUacgcACGGAAAGACGggGgcuGGACu -3'
miRNA:   3'- -CGCGa--UAc---UGCCUUUUUGCuuU---UUUG- -5'
22725 3' -40.6 NC_005091.1 + 22821 0.71 0.999227
Target:  5'- cGCGCUGacggccGGCGGcgGAACGAGcuGGAAUg -3'
miRNA:   3'- -CGCGAUa-----CUGCCuuUUUGCUU--UUUUG- -5'
22725 3' -40.6 NC_005091.1 + 25240 0.67 0.999998
Target:  5'- uCGCUAUGGCGGcgGucgguGCGuccGGGGCg -3'
miRNA:   3'- cGCGAUACUGCCuuUu----UGCuu-UUUUG- -5'
22725 3' -40.6 NC_005091.1 + 27415 0.66 1
Target:  5'- gGCGCUccGGgGGAuc-ACGAAAGGc- -3'
miRNA:   3'- -CGCGAuaCUgCCUuuuUGCUUUUUug -5'
22725 3' -40.6 NC_005091.1 + 28245 0.68 0.999989
Target:  5'- gGCGCUGUcaccgauuucGACGcGAAGACGAc-GGACg -3'
miRNA:   3'- -CGCGAUA----------CUGCcUUUUUGCUuuUUUG- -5'
22725 3' -40.6 NC_005091.1 + 29361 0.67 0.999997
Target:  5'- aCGCUGcacgcGACGGAuggcGCGAcGAAGCu -3'
miRNA:   3'- cGCGAUa----CUGCCUuuu-UGCUuUUUUG- -5'
22725 3' -40.6 NC_005091.1 + 33541 0.76 0.975105
Target:  5'- cGCGCgccucGGCGGAGAcuucCGAAAGAGCu -3'
miRNA:   3'- -CGCGaua--CUGCCUUUuu--GCUUUUUUG- -5'
22725 3' -40.6 NC_005091.1 + 33750 0.66 1
Target:  5'- aCGCUGUGGCuGGAAGAggcuaucGCGGc----- -3'
miRNA:   3'- cGCGAUACUG-CCUUUU-------UGCUuuuuug -5'
22725 3' -40.6 NC_005091.1 + 34107 0.68 0.999977
Target:  5'- cGCGUUgAUGACGGcguuuuGAAGCGAcauuuccuuGAAACg -3'
miRNA:   3'- -CGCGA-UACUGCCu-----UUUUGCUu--------UUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.