Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22725 | 3' | -40.6 | NC_005091.1 | + | 48462 | 1.16 | 0.016511 |
Target: 5'- gGCGCUAUGACGGAAAAACGAAAAAACg -3' miRNA: 3'- -CGCGAUACUGCCUUUUUGCUUUUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 3552 | 0.68 | 0.999989 |
Target: 5'- aCGCcGUGACGGAc--GCGAAccuGCg -3' miRNA: 3'- cGCGaUACUGCCUuuuUGCUUuuuUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 6885 | 0.67 | 0.999996 |
Target: 5'- cGCGCa---GCGGAAGcgggcgcGACGAAGAAAg -3' miRNA: 3'- -CGCGauacUGCCUUU-------UUGCUUUUUUg -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 52352 | 0.67 | 0.999997 |
Target: 5'- gGCGagcagGACGGAAu--CGAGAuGACg -3' miRNA: 3'- -CGCgaua-CUGCCUUuuuGCUUUuUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 4822 | 0.67 | 0.999999 |
Target: 5'- cGCGCUcgGcGCGGcgGcAACGGucAAGCg -3' miRNA: 3'- -CGCGAuaC-UGCCuuU-UUGCUuuUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 35939 | 0.66 | 0.999999 |
Target: 5'- cGCGCUgcgacuugAUGACGuuGAAGCGGuccacGACa -3' miRNA: 3'- -CGCGA--------UACUGCcuUUUUGCUuuu--UUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 1712 | 0.66 | 0.999999 |
Target: 5'- aGCGCgucaaaGGGuuacuugccGAAGCGAAGGAGCa -3' miRNA: 3'- -CGCGauacugCCU---------UUUUGCUUUUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 1014 | 0.66 | 1 |
Target: 5'- cGCGCUGcucGGCGucAAuACGAcgGAACg -3' miRNA: 3'- -CGCGAUa--CUGCcuUUuUGCUuuUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 6456 | 0.66 | 1 |
Target: 5'- cGCGCUGcgcUGAaGGAAGcaggcgcGACGGAuggcGAACg -3' miRNA: 3'- -CGCGAU---ACUgCCUUU-------UUGCUUu---UUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 51580 | 0.68 | 0.999989 |
Target: 5'- cGUGCgucgcGUGACGGGc--GCGcAGAAGCg -3' miRNA: 3'- -CGCGa----UACUGCCUuuuUGCuUUUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 48577 | 0.68 | 0.999989 |
Target: 5'- cGCGCcagccaGUGAcaCGGAGAcACGAucAAACg -3' miRNA: 3'- -CGCGa-----UACU--GCCUUUuUGCUuuUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 45104 | 0.77 | 0.964689 |
Target: 5'- uGCGCUGUcGcCGGAAGAGC-AGGAAACc -3' miRNA: 3'- -CGCGAUA-CuGCCUUUUUGcUUUUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 40979 | 0.73 | 0.997645 |
Target: 5'- uGCGCUGcgcgccuccgaacUGAagGGGAAAACGGAGAcGCc -3' miRNA: 3'- -CGCGAU-------------ACUg-CCUUUUUGCUUUUuUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 53272 | 0.73 | 0.997692 |
Target: 5'- cCGUaaAUGGCGGAAAGGCGAAAc--- -3' miRNA: 3'- cGCGa-UACUGCCUUUUUGCUUUuuug -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 639 | 0.71 | 0.999227 |
Target: 5'- cGCGCUGaacGCGGAGAAuCGAccGGGCa -3' miRNA: 3'- -CGCGAUac-UGCCUUUUuGCUuuUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 58032 | 0.71 | 0.999227 |
Target: 5'- cGCGCUGaacGCGGAGAAuCGAccGGGCa -3' miRNA: 3'- -CGCGAUac-UGCCUUUUuGCUuuUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 3056 | 0.7 | 0.99972 |
Target: 5'- cGCGUgcUGACGGAGcagcucCGAAAAAGg -3' miRNA: 3'- -CGCGauACUGCCUUuuu---GCUUUUUUg -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 57161 | 0.69 | 0.999954 |
Target: 5'- -gGCUGaGAUGGAAugGGGCGGcGAAGACg -3' miRNA: 3'- cgCGAUaCUGCCUU--UUUGCU-UUUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 34107 | 0.68 | 0.999977 |
Target: 5'- cGCGUUgAUGACGGcguuuuGAAGCGAcauuuccuuGAAACg -3' miRNA: 3'- -CGCGA-UACUGCCu-----UUUUGCUu--------UUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 48583 | 0.78 | 0.951546 |
Target: 5'- gGCGCgaAUGGCGGGAGGGCGc-AGAGCc -3' miRNA: 3'- -CGCGa-UACUGCCUUUUUGCuuUUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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