miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22726 3' -55 NC_005091.1 + 21587 0.69 0.53214
Target:  5'- ---cGCGGCAgaGCACGcuuGCGGCGa- -3'
miRNA:   3'- guuaCGCCGUgaCGUGCu--CGCUGUgc -5'
22726 3' -55 NC_005091.1 + 21831 0.67 0.65229
Target:  5'- ---cGCGGUcuugauuaaGCcGCGCGAGCGuCAUGa -3'
miRNA:   3'- guuaCGCCG---------UGaCGUGCUCGCuGUGC- -5'
22726 3' -55 NC_005091.1 + 21974 0.7 0.47995
Target:  5'- aCAuUGcCGGCACUGU-CGAcCGACGCGg -3'
miRNA:   3'- -GUuAC-GCCGUGACGuGCUcGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 22241 0.72 0.383065
Target:  5'- --cUGCGcggauugcuguacGCACUGCGCGGGCGcguCACGc -3'
miRNA:   3'- guuACGC-------------CGUGACGUGCUCGCu--GUGC- -5'
22726 3' -55 NC_005091.1 + 25216 0.68 0.630238
Target:  5'- cCGggGCGGcCGCUGCACcgGGGuCGAUGCa -3'
miRNA:   3'- -GUuaCGCC-GUGACGUG--CUC-GCUGUGc -5'
22726 3' -55 NC_005091.1 + 26221 0.66 0.714435
Target:  5'- aCGcgGCGGCAgcuucggcCUGagcggcagcccgaaUACGAGCGAgGCGa -3'
miRNA:   3'- -GUuaCGCCGU--------GAC--------------GUGCUCGCUgUGC- -5'
22726 3' -55 NC_005091.1 + 26752 0.67 0.696083
Target:  5'- --uUGCGGUAUUGaACGccuGCGACGCc -3'
miRNA:   3'- guuACGCCGUGACgUGCu--CGCUGUGc -5'
22726 3' -55 NC_005091.1 + 30346 0.73 0.340976
Target:  5'- aGAU-CGaGCAuCUGCACGAGCGcCACGg -3'
miRNA:   3'- gUUAcGC-CGU-GACGUGCUCGCuGUGC- -5'
22726 3' -55 NC_005091.1 + 31099 0.67 0.696083
Target:  5'- gCGAUcCGGCGCucaccgUGCaacugACGGGCGGCGCa -3'
miRNA:   3'- -GUUAcGCCGUG------ACG-----UGCUCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 31137 0.66 0.738878
Target:  5'- uCGAUGCgcuGGCGCUGUuCGAGCuGCGa- -3'
miRNA:   3'- -GUUACG---CCGUGACGuGCUCGcUGUgc -5'
22726 3' -55 NC_005091.1 + 31327 0.72 0.38396
Target:  5'- ---cGCGGCcUUGCACGuuCGGCGCGa -3'
miRNA:   3'- guuaCGCCGuGACGUGCucGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 32025 0.74 0.309171
Target:  5'- --uUGCGGCcCgucGCcuugGCGAGCGACGCGa -3'
miRNA:   3'- guuACGCCGuGa--CG----UGCUCGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 34558 0.69 0.542833
Target:  5'- aAGUGCuGGCgACUGC-CGAGUGggaccGCGCGg -3'
miRNA:   3'- gUUACG-CCG-UGACGuGCUCGC-----UGUGC- -5'
22726 3' -55 NC_005091.1 + 35087 0.72 0.38396
Target:  5'- gCAAUGCGGUgACUGCGgccCGuGCGGCGgCGg -3'
miRNA:   3'- -GUUACGCCG-UGACGU---GCuCGCUGU-GC- -5'
22726 3' -55 NC_005091.1 + 36394 0.67 0.663293
Target:  5'- ---aGCGGguCgGCACGccGCGACGCu -3'
miRNA:   3'- guuaCGCCguGaCGUGCu-CGCUGUGc -5'
22726 3' -55 NC_005091.1 + 37835 0.68 0.63465
Target:  5'- aCGGUGCGGUuguccauggugaacaACUGCcCGAGUugugagauaGACGCGc -3'
miRNA:   3'- -GUUACGCCG---------------UGACGuGCUCG---------CUGUGC- -5'
22726 3' -55 NC_005091.1 + 38159 0.68 0.608193
Target:  5'- ---cGCuGGCcCUGC-CGGGCGAgACGa -3'
miRNA:   3'- guuaCG-CCGuGACGuGCUCGCUgUGC- -5'
22726 3' -55 NC_005091.1 + 38906 0.66 0.738878
Target:  5'- aGAUGCaGGCGCUugauUACGGGCGA-ACGg -3'
miRNA:   3'- gUUACG-CCGUGAc---GUGCUCGCUgUGC- -5'
22726 3' -55 NC_005091.1 + 40740 0.72 0.36461
Target:  5'- -cGUGaagGGCGCUGCGCGuaccgagaauucGCGACGCGg -3'
miRNA:   3'- guUACg--CCGUGACGUGCu-----------CGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 41727 0.71 0.449861
Target:  5'- ----cUGGCGCUGCACGA-UGGCGCGu -3'
miRNA:   3'- guuacGCCGUGACGUGCUcGCUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.