miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22726 3' -55 NC_005091.1 + 5097 0.65 0.759673
Target:  5'- --cUGCGGgGCgUGaCAUGGGCGGCcCGu -3'
miRNA:   3'- guuACGCCgUG-AC-GUGCUCGCUGuGC- -5'
22726 3' -55 NC_005091.1 + 6888 0.67 0.65229
Target:  5'- uGAUGUaGUAgaGCGCGAGCuGCGCGu -3'
miRNA:   3'- gUUACGcCGUgaCGUGCUCGcUGUGC- -5'
22726 3' -55 NC_005091.1 + 6998 0.66 0.738878
Target:  5'- --cUGCuGGCGgaagGCAaggUGAGCGGCACGa -3'
miRNA:   3'- guuACG-CCGUga--CGU---GCUCGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 7198 0.68 0.630238
Target:  5'- gGAUgGCGGCGa-GCAgCGAGCGGC-CGa -3'
miRNA:   3'- gUUA-CGCCGUgaCGU-GCUCGCUGuGC- -5'
22726 3' -55 NC_005091.1 + 8071 0.68 0.586231
Target:  5'- ----aCGGgGCUGCACGuAGCGGC-CGa -3'
miRNA:   3'- guuacGCCgUGACGUGC-UCGCUGuGC- -5'
22726 3' -55 NC_005091.1 + 8850 0.68 0.61921
Target:  5'- uCGGUGuUGGCGCUGCuGCGcuGGCGAUgaACGu -3'
miRNA:   3'- -GUUAC-GCCGUGACG-UGC--UCGCUG--UGC- -5'
22726 3' -55 NC_005091.1 + 9238 0.75 0.259061
Target:  5'- gCGGUGCGGCcCUGCgaaGGGCGAC-CGg -3'
miRNA:   3'- -GUUACGCCGuGACGug-CUCGCUGuGC- -5'
22726 3' -55 NC_005091.1 + 9282 0.66 0.749336
Target:  5'- gCGAUuCGGgucgccgGCUGCACG-GCGACGCa -3'
miRNA:   3'- -GUUAcGCCg------UGACGUGCuCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 10142 0.66 0.706903
Target:  5'- ---cGcCGGCAC-GCGcCGAGCGccGCACGu -3'
miRNA:   3'- guuaC-GCCGUGaCGU-GCUCGC--UGUGC- -5'
22726 3' -55 NC_005091.1 + 10226 0.71 0.430388
Target:  5'- aAGUGCGGCGCUcgGCGCGuGcCGGCGu- -3'
miRNA:   3'- gUUACGCCGUGA--CGUGCuC-GCUGUgc -5'
22726 3' -55 NC_005091.1 + 12115 0.72 0.402131
Target:  5'- uGAUGCGGaACgGCACG-GCGAgCACGa -3'
miRNA:   3'- gUUACGCCgUGaCGUGCuCGCU-GUGC- -5'
22726 3' -55 NC_005091.1 + 13330 0.7 0.469808
Target:  5'- uCGAUGCGGCcaACaaguucguUGCGCGGaucGCGGCGCa -3'
miRNA:   3'- -GUUACGCCG--UG--------ACGUGCU---CGCUGUGc -5'
22726 3' -55 NC_005091.1 + 13952 0.67 0.663293
Target:  5'- uCGGUGCGGacuCgggGguCGAGUGAUACGc -3'
miRNA:   3'- -GUUACGCCgu-Ga--CguGCUCGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 14760 0.66 0.71765
Target:  5'- uCAGUGCGGUugUcgGCcCGGcCGAUACGa -3'
miRNA:   3'- -GUUACGCCGugA--CGuGCUcGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 14967 0.68 0.641268
Target:  5'- ---cGCGGUucCUGCGCGAG-GAUGCa -3'
miRNA:   3'- guuaCGCCGu-GACGUGCUCgCUGUGc -5'
22726 3' -55 NC_005091.1 + 15087 0.68 0.641268
Target:  5'- ---cGCGGUucCUGCGCGAG-GAUGCa -3'
miRNA:   3'- guuaCGCCGu-GACGUGCUCgCUGUGc -5'
22726 3' -55 NC_005091.1 + 16344 0.72 0.411419
Target:  5'- -cGUGCucGGCGCguucGuCGCGAGCGGCGCa -3'
miRNA:   3'- guUACG--CCGUGa---C-GUGCUCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 16686 0.65 0.759673
Target:  5'- ---gGCGGCGCagggagGCAuucccgacgcacCGAGCGACgGCGu -3'
miRNA:   3'- guuaCGCCGUGa-----CGU------------GCUCGCUG-UGC- -5'
22726 3' -55 NC_005091.1 + 17452 0.71 0.449861
Target:  5'- -cGUGCGGaACUGCACG-GCGAUuuGCa -3'
miRNA:   3'- guUACGCCgUGACGUGCuCGCUG--UGc -5'
22726 3' -55 NC_005091.1 + 20358 0.7 0.469808
Target:  5'- gCAcgGCGGCuACUcGCAaagcGGCGACGCGu -3'
miRNA:   3'- -GUuaCGCCG-UGA-CGUgc--UCGCUGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.