miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22726 3' -55 NC_005091.1 + 13952 0.67 0.663293
Target:  5'- uCGGUGCGGacuCgggGguCGAGUGAUACGc -3'
miRNA:   3'- -GUUACGCCgu-Ga--CguGCUCGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 55839 0.68 0.615903
Target:  5'- ---aGCGGCgcagccggucagcaACUggcGCACGAGCuGCACGg -3'
miRNA:   3'- guuaCGCCG--------------UGA---CGUGCUCGcUGUGC- -5'
22726 3' -55 NC_005091.1 + 8850 0.68 0.61921
Target:  5'- uCGGUGuUGGCGCUGCuGCGcuGGCGAUgaACGu -3'
miRNA:   3'- -GUUAC-GCCGUGACG-UGC--UCGCUG--UGC- -5'
22726 3' -55 NC_005091.1 + 7198 0.68 0.630238
Target:  5'- gGAUgGCGGCGa-GCAgCGAGCGGC-CGa -3'
miRNA:   3'- gUUA-CGCCGUgaCGU-GCUCGCUGuGC- -5'
22726 3' -55 NC_005091.1 + 43102 0.68 0.630238
Target:  5'- --uUGCccGGCGCUuucGCgACGAGCGGgGCGa -3'
miRNA:   3'- guuACG--CCGUGA---CG-UGCUCGCUgUGC- -5'
22726 3' -55 NC_005091.1 + 49831 0.68 0.630238
Target:  5'- ---gGCGGC-UUGCGCGuugagcGCGGCACu -3'
miRNA:   3'- guuaCGCCGuGACGUGCu-----CGCUGUGc -5'
22726 3' -55 NC_005091.1 + 37835 0.68 0.63465
Target:  5'- aCGGUGCGGUuguccauggugaacaACUGCcCGAGUugugagauaGACGCGc -3'
miRNA:   3'- -GUUACGCCG---------------UGACGuGCUCG---------CUGUGC- -5'
22726 3' -55 NC_005091.1 + 44402 0.68 0.641268
Target:  5'- ---aGCGGCACUGCACauuGUGugguGCACc -3'
miRNA:   3'- guuaCGCCGUGACGUGcu-CGC----UGUGc -5'
22726 3' -55 NC_005091.1 + 21831 0.67 0.65229
Target:  5'- ---cGCGGUcuugauuaaGCcGCGCGAGCGuCAUGa -3'
miRNA:   3'- guuaCGCCG---------UGaCGUGCUCGCuGUGC- -5'
22726 3' -55 NC_005091.1 + 38159 0.68 0.608193
Target:  5'- ---cGCuGGCcCUGC-CGGGCGAgACGa -3'
miRNA:   3'- guuaCG-CCGuGACGuGCUCGCUgUGC- -5'
22726 3' -55 NC_005091.1 + 49033 0.68 0.604892
Target:  5'- -cGUGCGGUgcugcgggcgcgcuGCUGCgcaccguguGCGGGCGGgGCGa -3'
miRNA:   3'- guUACGCCG--------------UGACG---------UGCUCGCUgUGC- -5'
22726 3' -55 NC_005091.1 + 8071 0.68 0.586231
Target:  5'- ----aCGGgGCUGCACGuAGCGGC-CGa -3'
miRNA:   3'- guuacGCCgUGACGUGC-UCGCUGuGC- -5'
22726 3' -55 NC_005091.1 + 9238 0.75 0.259061
Target:  5'- gCGGUGCGGCcCUGCgaaGGGCGAC-CGg -3'
miRNA:   3'- -GUUACGCCGuGACGug-CUCGCUGuGC- -5'
22726 3' -55 NC_005091.1 + 32025 0.74 0.309171
Target:  5'- --uUGCGGCcCgucGCcuugGCGAGCGACGCGa -3'
miRNA:   3'- guuACGCCGuGa--CG----UGCUCGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 31327 0.72 0.38396
Target:  5'- ---cGCGGCcUUGCACGuuCGGCGCGa -3'
miRNA:   3'- guuaCGCCGuGACGUGCucGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 51608 0.72 0.38396
Target:  5'- ---cGCGGCACggGCGCGAuuCGGCAUGa -3'
miRNA:   3'- guuaCGCCGUGa-CGUGCUc-GCUGUGC- -5'
22726 3' -55 NC_005091.1 + 12115 0.72 0.402131
Target:  5'- uGAUGCGGaACgGCACG-GCGAgCACGa -3'
miRNA:   3'- gUUACGCCgUGaCGUGCuCGCU-GUGC- -5'
22726 3' -55 NC_005091.1 + 17452 0.71 0.449861
Target:  5'- -cGUGCGGaACUGCACG-GCGAUuuGCa -3'
miRNA:   3'- guUACGCCgUGACGUGCuCGCUG--UGc -5'
22726 3' -55 NC_005091.1 + 21974 0.7 0.47995
Target:  5'- aCAuUGcCGGCACUGU-CGAcCGACGCGg -3'
miRNA:   3'- -GUuAC-GCCGUGACGuGCUcGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 54738 0.69 0.553596
Target:  5'- cCAAaGCGGCACgGCAUGAcugagauucuagGCGACAa- -3'
miRNA:   3'- -GUUaCGCCGUGaCGUGCU------------CGCUGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.