miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22726 3' -55 NC_005091.1 + 48709 1.1 0.001006
Target:  5'- cCAAUGCGGCACUGCACGAGCGACACGg -3'
miRNA:   3'- -GUUACGCCGUGACGUGCUCGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 51848 0.75 0.252469
Target:  5'- gGAUGCGauGCUGCGCGAGUcGCGCGa -3'
miRNA:   3'- gUUACGCcgUGACGUGCUCGcUGUGC- -5'
22726 3' -55 NC_005091.1 + 9238 0.75 0.259061
Target:  5'- gCGGUGCGGCcCUGCgaaGGGCGAC-CGg -3'
miRNA:   3'- -GUUACGCCGuGACGug-CUCGCUGuGC- -5'
22726 3' -55 NC_005091.1 + 32025 0.74 0.309171
Target:  5'- --uUGCGGCcCgucGCcuugGCGAGCGACGCGa -3'
miRNA:   3'- guuACGCCGuGa--CG----UGCUCGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 49404 0.73 0.332808
Target:  5'- uGAUGCGG-ACgGCACGAGCgcuaucGACGCGu -3'
miRNA:   3'- gUUACGCCgUGaCGUGCUCG------CUGUGC- -5'
22726 3' -55 NC_005091.1 + 30346 0.73 0.340976
Target:  5'- aGAU-CGaGCAuCUGCACGAGCGcCACGg -3'
miRNA:   3'- gUUAcGC-CGU-GACGUGCUCGCuGUGC- -5'
22726 3' -55 NC_005091.1 + 40740 0.72 0.36461
Target:  5'- -cGUGaagGGCGCUGCGCGuaccgagaauucGCGACGCGg -3'
miRNA:   3'- guUACg--CCGUGACGUGCu-----------CGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 55022 0.72 0.37508
Target:  5'- ---cGCGGCGCUuggcgaGCGCGuugcGGCGGCGCa -3'
miRNA:   3'- guuaCGCCGUGA------CGUGC----UCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 22241 0.72 0.383065
Target:  5'- --cUGCGcggauugcuguacGCACUGCGCGGGCGcguCACGc -3'
miRNA:   3'- guuACGC-------------CGUGACGUGCUCGCu--GUGC- -5'
22726 3' -55 NC_005091.1 + 51608 0.72 0.38396
Target:  5'- ---cGCGGCACggGCGCGAuuCGGCAUGa -3'
miRNA:   3'- guuaCGCCGUGa-CGUGCUc-GCUGUGC- -5'
22726 3' -55 NC_005091.1 + 35087 0.72 0.38396
Target:  5'- gCAAUGCGGUgACUGCGgccCGuGCGGCGgCGg -3'
miRNA:   3'- -GUUACGCCG-UGACGU---GCuCGCUGU-GC- -5'
22726 3' -55 NC_005091.1 + 31327 0.72 0.38396
Target:  5'- ---cGCGGCcUUGCACGuuCGGCGCGa -3'
miRNA:   3'- guuaCGCCGuGACGUGCucGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 53756 0.72 0.402131
Target:  5'- --uUGCGaGCAUUGC-CGAGCGcaACGCGu -3'
miRNA:   3'- guuACGC-CGUGACGuGCUCGC--UGUGC- -5'
22726 3' -55 NC_005091.1 + 12115 0.72 0.402131
Target:  5'- uGAUGCGGaACgGCACG-GCGAgCACGa -3'
miRNA:   3'- gUUACGCCgUGaCGUGCuCGCU-GUGC- -5'
22726 3' -55 NC_005091.1 + 16344 0.72 0.411419
Target:  5'- -cGUGCucGGCGCguucGuCGCGAGCGGCGCa -3'
miRNA:   3'- guUACG--CCGUGa---C-GUGCUCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 10226 0.71 0.430388
Target:  5'- aAGUGCGGCGCUcgGCGCGuGcCGGCGu- -3'
miRNA:   3'- gUUACGCCGUGA--CGUGCuC-GCUGUgc -5'
22726 3' -55 NC_005091.1 + 41727 0.71 0.449861
Target:  5'- ----cUGGCGCUGCACGA-UGGCGCGu -3'
miRNA:   3'- guuacGCCGUGACGUGCUcGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 17452 0.71 0.449861
Target:  5'- -cGUGCGGaACUGCACG-GCGAUuuGCa -3'
miRNA:   3'- guUACGCCgUGACGUGCuCGCUG--UGc -5'
22726 3' -55 NC_005091.1 + 13330 0.7 0.469808
Target:  5'- uCGAUGCGGCcaACaaguucguUGCGCGGaucGCGGCGCa -3'
miRNA:   3'- -GUUACGCCG--UG--------ACGUGCU---CGCUGUGc -5'
22726 3' -55 NC_005091.1 + 20358 0.7 0.469808
Target:  5'- gCAcgGCGGCuACUcGCAaagcGGCGACGCGu -3'
miRNA:   3'- -GUuaCGCCG-UGA-CGUgc--UCGCUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.