miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22727 3' -55.7 NC_005091.1 + 32183 0.66 0.73755
Target:  5'- gGCCGGAUCggaaguaaCUuCCGGUGCGGcgGcaGCGa -3'
miRNA:   3'- -UGGUCUAG--------GGuGGCUACGCCuaC--UGC- -5'
22727 3' -55.7 NC_005091.1 + 48607 0.66 0.73755
Target:  5'- gGCCgucgGGGUCCCAuCCGGcgagGCGcGaAUGGCGg -3'
miRNA:   3'- -UGG----UCUAGGGU-GGCUa---CGC-C-UACUGC- -5'
22727 3' -55.7 NC_005091.1 + 14024 0.66 0.7271
Target:  5'- cCCGaGUCCgCACCGAaGUGGAUcGACu -3'
miRNA:   3'- uGGUcUAGG-GUGGCUaCGCCUA-CUGc -5'
22727 3' -55.7 NC_005091.1 + 49636 0.66 0.705931
Target:  5'- uGCCA-AUCCgAUCGAUGCGGccguGUGAUu -3'
miRNA:   3'- -UGGUcUAGGgUGGCUACGCC----UACUGc -5'
22727 3' -55.7 NC_005091.1 + 14939 0.66 0.695235
Target:  5'- gACgAGA-CCCGCCGcAUGCgaaccaccGGAUGGCc -3'
miRNA:   3'- -UGgUCUaGGGUGGC-UACG--------CCUACUGc -5'
22727 3' -55.7 NC_005091.1 + 32105 0.67 0.651959
Target:  5'- gGCCGGGUCCgCGCCGAcuuccggguugcUGCuGGAguccaucgccuUGugGa -3'
miRNA:   3'- -UGGUCUAGG-GUGGCU------------ACG-CCU-----------ACugC- -5'
22727 3' -55.7 NC_005091.1 + 18459 0.67 0.64107
Target:  5'- cGCCGGGUCgUAguCCGA-GCGGAUcaGACGc -3'
miRNA:   3'- -UGGUCUAGgGU--GGCUaCGCCUA--CUGC- -5'
22727 3' -55.7 NC_005091.1 + 27393 0.7 0.470571
Target:  5'- gGCUuGAUCCCgaagagaACCGGuUGaCGGAUGGCGa -3'
miRNA:   3'- -UGGuCUAGGG-------UGGCU-AC-GCCUACUGC- -5'
22727 3' -55.7 NC_005091.1 + 34879 0.71 0.423066
Target:  5'- cGCCGGAUgcccucaucaaCCCGCUGAaGCGGAUcgccGACGc -3'
miRNA:   3'- -UGGUCUA-----------GGGUGGCUaCGCCUA----CUGC- -5'
22727 3' -55.7 NC_005091.1 + 17938 0.73 0.303874
Target:  5'- cGCaCAGGUCCCgGCCGAUaGCGGAacguuugucgccgUGGCGc -3'
miRNA:   3'- -UG-GUCUAGGG-UGGCUA-CGCCU-------------ACUGC- -5'
22727 3' -55.7 NC_005091.1 + 49183 0.94 0.013075
Target:  5'- uACCAGuaCCCACCGAUGCGGAUGACGu -3'
miRNA:   3'- -UGGUCuaGGGUGGCUACGCCUACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.