Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22729 | 5' | -58.2 | NC_005091.1 | + | 25647 | 0.66 | 0.543802 |
Target: 5'- aUCGCCGaGCUgGCCGCG--CAGUu- -3' miRNA: 3'- aAGCGGUaCGAgCGGCGCuaGUCGcu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 26035 | 0.68 | 0.442115 |
Target: 5'- -aCGCCGUGg-CGagCGCGAUCAGCu- -3' miRNA: 3'- aaGCGGUACgaGCg-GCGCUAGUCGcu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 27869 | 0.69 | 0.37246 |
Target: 5'- -cUGCCAUGCgUCGCCcuucaacuggaaguuGCcGUCAGCGGu -3' miRNA: 3'- aaGCGGUACG-AGCGG---------------CGcUAGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 29547 | 0.66 | 0.53323 |
Target: 5'- cUCGCCcgGUUCGCCGaaccgGGaCAGaCGAc -3' miRNA: 3'- aAGCGGuaCGAGCGGCg----CUaGUC-GCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 29695 | 0.66 | 0.53323 |
Target: 5'- --gGCCcucccGCUCGcCCGCaccgaGAUCGGCGAg -3' miRNA: 3'- aagCGGua---CGAGC-GGCG-----CUAGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 32314 | 0.66 | 0.53323 |
Target: 5'- -aUGCC-UGCUuggCGCuCGCGGUCGGCc- -3' miRNA: 3'- aaGCGGuACGA---GCG-GCGCUAGUCGcu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 33164 | 0.66 | 0.53323 |
Target: 5'- gUCGUCGUGUUCGagCGCGuuAUCGGCc- -3' miRNA: 3'- aAGCGGUACGAGCg-GCGC--UAGUCGcu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 34758 | 0.7 | 0.319873 |
Target: 5'- gUCgGCCAUGUcccgGCCGCGcgcGUCGGCGAu -3' miRNA: 3'- aAG-CGGUACGag--CGGCGC---UAGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 36494 | 0.67 | 0.495831 |
Target: 5'- -gCGCCGUGCU-GCgGCGGccggaucgaagcggaUCAGCGc -3' miRNA: 3'- aaGCGGUACGAgCGgCGCU---------------AGUCGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 40645 | 0.75 | 0.150633 |
Target: 5'- --gGCCGUGCUCGgCGCGGgauaccgacUCGGCGGc -3' miRNA: 3'- aagCGGUACGAGCgGCGCU---------AGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 40903 | 0.67 | 0.501985 |
Target: 5'- gUCGCCGUccgGUUCGgCGCuuUCGGCGu -3' miRNA: 3'- aAGCGGUA---CGAGCgGCGcuAGUCGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 43190 | 0.73 | 0.202409 |
Target: 5'- aUCGCCccGCUCGUCGCGAa-AGCGc -3' miRNA: 3'- aAGCGGuaCGAGCGGCGCUagUCGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 43875 | 0.7 | 0.304622 |
Target: 5'- --aGCCAUGCUCuaUGCGcUCGGCGc -3' miRNA: 3'- aagCGGUACGAGcgGCGCuAGUCGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 47070 | 0.72 | 0.25178 |
Target: 5'- -aUGCCAgccagucgaugaagaUGCcgCGCuCGCGGUCAGCGGg -3' miRNA: 3'- aaGCGGU---------------ACGa-GCG-GCGCUAGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 49551 | 0.67 | 0.491748 |
Target: 5'- aUUgGCC-UGCUCGUCGCGcUCGuGCGc -3' miRNA: 3'- -AAgCGGuACGAGCGGCGCuAGU-CGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 49806 | 0.67 | 0.481607 |
Target: 5'- -cUGCCgAUGCgaUCGCCGCGuUCguGGCGGc -3' miRNA: 3'- aaGCGG-UACG--AGCGGCGCuAG--UCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 50709 | 0.71 | 0.278591 |
Target: 5'- gUCGCCAUGCUUguaccgcuccggauaGCCGCGcgCA-CGAc -3' miRNA: 3'- aAGCGGUACGAG---------------CGGCGCuaGUcGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 50929 | 0.72 | 0.242911 |
Target: 5'- -cCGCC--GUUUGCCGCG-UCAGCGAc -3' miRNA: 3'- aaGCGGuaCGAGCGGCGCuAGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 52964 | 1.06 | 0.000722 |
Target: 5'- gUUCGCCAUGCUCGCCGCGAUCAGCGAa -3' miRNA: 3'- -AAGCGGUACGAGCGGCGCUAGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 53506 | 0.72 | 0.249219 |
Target: 5'- gUCGCCA---UCGCCGUGuucAUCGGCGAa -3' miRNA: 3'- aAGCGGUacgAGCGGCGC---UAGUCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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