miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22729 5' -58.2 NC_005091.1 + 930 0.67 0.501985
Target:  5'- -aCGCCAUGUUCGUCGCGua---CGAc -3'
miRNA:   3'- aaGCGGUACGAGCGGCGCuagucGCU- -5'
22729 5' -58.2 NC_005091.1 + 2082 0.72 0.242911
Target:  5'- gUUCGCCA-GCaUgGCCGCGA-CAGCGu -3'
miRNA:   3'- -AAGCGGUaCG-AgCGGCGCUaGUCGCu -5'
22729 5' -58.2 NC_005091.1 + 3541 0.66 0.554441
Target:  5'- gUCGCCGUcugccaGUUCGaCCG-GGUCAGCa- -3'
miRNA:   3'- aAGCGGUA------CGAGC-GGCgCUAGUCGcu -5'
22729 5' -58.2 NC_005091.1 + 7065 0.67 0.471569
Target:  5'- -cCGCCAgcaGCUCGaugaCGCGcggGUCGGCGu -3'
miRNA:   3'- aaGCGGUa--CGAGCg---GCGC---UAGUCGCu -5'
22729 5' -58.2 NC_005091.1 + 7678 0.68 0.442115
Target:  5'- uUUCGCCGcucgguaucUGCgaaGUCGaGAUCAGCGAc -3'
miRNA:   3'- -AAGCGGU---------ACGag-CGGCgCUAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 8736 0.72 0.236736
Target:  5'- aUCGCCgauaucauuGUGCagGCUGCGAuguUCGGCGAa -3'
miRNA:   3'- aAGCGG---------UACGagCGGCGCU---AGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 9197 0.66 0.522733
Target:  5'- gUCGCCGUGCa-GCCGgCGAcccgaaUCGcGCGGu -3'
miRNA:   3'- aAGCGGUACGagCGGC-GCU------AGU-CGCU- -5'
22729 5' -58.2 NC_005091.1 + 12209 0.69 0.377682
Target:  5'- aUCGCCAucaucgUGCUCGCCGUGccguUCcGCa- -3'
miRNA:   3'- aAGCGGU------ACGAGCGGCGCu---AGuCGcu -5'
22729 5' -58.2 NC_005091.1 + 12442 0.66 0.554441
Target:  5'- cUgGCCGcGCUCGUCGCGGUCuuuuuguauAGCc- -3'
miRNA:   3'- aAgCGGUaCGAGCGGCGCUAG---------UCGcu -5'
22729 5' -58.2 NC_005091.1 + 15714 0.66 0.543802
Target:  5'- -aUGCCGUGCccccggUUGuuGCGAUCuGCGc -3'
miRNA:   3'- aaGCGGUACG------AGCggCGCUAGuCGCu -5'
22729 5' -58.2 NC_005091.1 + 16028 0.67 0.481607
Target:  5'- -gCGUCGUGCU-GCCGCcGGcCGGCGGc -3'
miRNA:   3'- aaGCGGUACGAgCGGCG-CUaGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 16340 0.66 0.512316
Target:  5'- cUCGgCGcGUUCGUCGCGAgCGGCGc -3'
miRNA:   3'- aAGCgGUaCGAGCGGCGCUaGUCGCu -5'
22729 5' -58.2 NC_005091.1 + 16447 0.71 0.262241
Target:  5'- gUCGCCAUGCUcgaCGCCGgGAuuuggaccUCGGCc- -3'
miRNA:   3'- aAGCGGUACGA---GCGGCgCU--------AGUCGcu -5'
22729 5' -58.2 NC_005091.1 + 17720 0.7 0.32771
Target:  5'- --aGCCggGCaUgGCCGCGAuuaUCGGCGAc -3'
miRNA:   3'- aagCGGuaCG-AgCGGCGCU---AGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 18229 0.66 0.511279
Target:  5'- aUCGCCGggccgcgaaGCUCgGCCGaccgacguguucuCGAUCAGCGu -3'
miRNA:   3'- aAGCGGUa--------CGAG-CGGC-------------GCUAGUCGCu -5'
22729 5' -58.2 NC_005091.1 + 19546 0.67 0.461638
Target:  5'- -aCGCCGcagGC-CGUCGUGuUCGGCGAu -3'
miRNA:   3'- aaGCGGUa--CGaGCGGCGCuAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 20023 0.66 0.512316
Target:  5'- cUUCGCCAcgaacgGCguuaucacUGCCGUGggCGGCGAu -3'
miRNA:   3'- -AAGCGGUa-----CGa-------GCGGCGCuaGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 21506 0.69 0.343808
Target:  5'- aUCGCCgcaagcGUGCUCuGCCGCGucgccUCGGCu- -3'
miRNA:   3'- aAGCGG------UACGAG-CGGCGCu----AGUCGcu -5'
22729 5' -58.2 NC_005091.1 + 24391 0.69 0.386494
Target:  5'- --gGCCA-GCcuaUCGCCGCGAUCaaGGCGc -3'
miRNA:   3'- aagCGGUaCG---AGCGGCGCUAG--UCGCu -5'
22729 5' -58.2 NC_005091.1 + 25330 0.67 0.481607
Target:  5'- -aCGCCGUGggCGaCGUGAUCGGCc- -3'
miRNA:   3'- aaGCGGUACgaGCgGCGCUAGUCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.