miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22729 5' -58.2 NC_005091.1 + 52964 1.06 0.000722
Target:  5'- gUUCGCCAUGCUCGCCGCGAUCAGCGAa -3'
miRNA:   3'- -AAGCGGUACGAGCGGCGCUAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 55592 0.77 0.114324
Target:  5'- -gCGCuCGUGCagGCgGCGAUCGGCGAa -3'
miRNA:   3'- aaGCG-GUACGagCGgCGCUAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 40645 0.75 0.150633
Target:  5'- --gGCCGUGCUCGgCGCGGgauaccgacUCGGCGGc -3'
miRNA:   3'- aagCGGUACGAGCgGCGCU---------AGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 43190 0.73 0.202409
Target:  5'- aUCGCCccGCUCGUCGCGAa-AGCGc -3'
miRNA:   3'- aAGCGGuaCGAGCGGCGCUagUCGCu -5'
22729 5' -58.2 NC_005091.1 + 8736 0.72 0.236736
Target:  5'- aUCGCCgauaucauuGUGCagGCUGCGAuguUCGGCGAa -3'
miRNA:   3'- aAGCGG---------UACGagCGGCGCU---AGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 50929 0.72 0.242911
Target:  5'- -cCGCC--GUUUGCCGCG-UCAGCGAc -3'
miRNA:   3'- aaGCGGuaCGAGCGGCGCuAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 2082 0.72 0.242911
Target:  5'- gUUCGCCA-GCaUgGCCGCGA-CAGCGu -3'
miRNA:   3'- -AAGCGGUaCG-AgCGGCGCUaGUCGCu -5'
22729 5' -58.2 NC_005091.1 + 53506 0.72 0.249219
Target:  5'- gUCGCCA---UCGCCGUGuucAUCGGCGAa -3'
miRNA:   3'- aAGCGGUacgAGCGGCGC---UAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 47070 0.72 0.25178
Target:  5'- -aUGCCAgccagucgaugaagaUGCcgCGCuCGCGGUCAGCGGg -3'
miRNA:   3'- aaGCGGU---------------ACGa-GCG-GCGCUAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 16447 0.71 0.262241
Target:  5'- gUCGCCAUGCUcgaCGCCGgGAuuuggaccUCGGCc- -3'
miRNA:   3'- aAGCGGUACGA---GCGGCgCU--------AGUCGcu -5'
22729 5' -58.2 NC_005091.1 + 50709 0.71 0.278591
Target:  5'- gUCGCCAUGCUUguaccgcuccggauaGCCGCGcgCA-CGAc -3'
miRNA:   3'- aAGCGGUACGAG---------------CGGCGCuaGUcGCU- -5'
22729 5' -58.2 NC_005091.1 + 43875 0.7 0.304622
Target:  5'- --aGCCAUGCUCuaUGCGcUCGGCGc -3'
miRNA:   3'- aagCGGUACGAGcgGCGCuAGUCGCu -5'
22729 5' -58.2 NC_005091.1 + 34758 0.7 0.319873
Target:  5'- gUCgGCCAUGUcccgGCCGCGcgcGUCGGCGAu -3'
miRNA:   3'- aAG-CGGUACGag--CGGCGC---UAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 17720 0.7 0.32771
Target:  5'- --aGCCggGCaUgGCCGCGAuuaUCGGCGAc -3'
miRNA:   3'- aagCGGuaCG-AgCGGCGCU---AGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 21506 0.69 0.343808
Target:  5'- aUCGCCgcaagcGUGCUCuGCCGCGucgccUCGGCu- -3'
miRNA:   3'- aAGCGG------UACGAG-CGGCGCu----AGUCGcu -5'
22729 5' -58.2 NC_005091.1 + 27869 0.69 0.37246
Target:  5'- -cUGCCAUGCgUCGCCcuucaacuggaaguuGCcGUCAGCGGu -3'
miRNA:   3'- aaGCGGUACG-AGCGG---------------CGcUAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 12209 0.69 0.377682
Target:  5'- aUCGCCAucaucgUGCUCGCCGUGccguUCcGCa- -3'
miRNA:   3'- aAGCGGU------ACGAGCGGCGCu---AGuCGcu -5'
22729 5' -58.2 NC_005091.1 + 24391 0.69 0.386494
Target:  5'- --gGCCA-GCcuaUCGCCGCGAUCaaGGCGc -3'
miRNA:   3'- aagCGGUaCG---AGCGGCGCUAG--UCGCu -5'
22729 5' -58.2 NC_005091.1 + 26035 0.68 0.442115
Target:  5'- -aCGCCGUGg-CGagCGCGAUCAGCu- -3'
miRNA:   3'- aaGCGGUACgaGCg-GCGCUAGUCGcu -5'
22729 5' -58.2 NC_005091.1 + 7678 0.68 0.442115
Target:  5'- uUUCGCCGcucgguaucUGCgaaGUCGaGAUCAGCGAc -3'
miRNA:   3'- -AAGCGGU---------ACGag-CGGCgCUAGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.