miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22729 5' -58.2 NC_005091.1 + 25647 0.66 0.543802
Target:  5'- aUCGCCGaGCUgGCCGCG--CAGUu- -3'
miRNA:   3'- aAGCGGUaCGAgCGGCGCuaGUCGcu -5'
22729 5' -58.2 NC_005091.1 + 16028 0.67 0.481607
Target:  5'- -gCGUCGUGCU-GCCGCcGGcCGGCGGc -3'
miRNA:   3'- aaGCGGUACGAgCGGCG-CUaGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 49806 0.67 0.481607
Target:  5'- -cUGCCgAUGCgaUCGCCGCGuUCguGGCGGc -3'
miRNA:   3'- aaGCGG-UACG--AGCGGCGCuAG--UCGCU- -5'
22729 5' -58.2 NC_005091.1 + 930 0.67 0.501985
Target:  5'- -aCGCCAUGUUCGUCGCGua---CGAc -3'
miRNA:   3'- aaGCGGUACGAGCGGCGCuagucGCU- -5'
22729 5' -58.2 NC_005091.1 + 40903 0.67 0.501985
Target:  5'- gUCGCCGUccgGUUCGgCGCuuUCGGCGu -3'
miRNA:   3'- aAGCGGUA---CGAGCgGCGcuAGUCGCu -5'
22729 5' -58.2 NC_005091.1 + 9197 0.66 0.522733
Target:  5'- gUCGCCGUGCa-GCCGgCGAcccgaaUCGcGCGGu -3'
miRNA:   3'- aAGCGGUACGagCGGC-GCU------AGU-CGCU- -5'
22729 5' -58.2 NC_005091.1 + 32314 0.66 0.53323
Target:  5'- -aUGCC-UGCUuggCGCuCGCGGUCGGCc- -3'
miRNA:   3'- aaGCGGuACGA---GCG-GCGCUAGUCGcu -5'
22729 5' -58.2 NC_005091.1 + 33164 0.66 0.53323
Target:  5'- gUCGUCGUGUUCGagCGCGuuAUCGGCc- -3'
miRNA:   3'- aAGCGGUACGAGCg-GCGC--UAGUCGcu -5'
22729 5' -58.2 NC_005091.1 + 15714 0.66 0.543802
Target:  5'- -aUGCCGUGCccccggUUGuuGCGAUCuGCGc -3'
miRNA:   3'- aaGCGGUACG------AGCggCGCUAGuCGCu -5'
22729 5' -58.2 NC_005091.1 + 26035 0.68 0.442115
Target:  5'- -aCGCCGUGg-CGagCGCGAUCAGCu- -3'
miRNA:   3'- aaGCGGUACgaGCg-GCGCUAGUCGcu -5'
22729 5' -58.2 NC_005091.1 + 7678 0.68 0.442115
Target:  5'- uUUCGCCGcucgguaucUGCgaaGUCGaGAUCAGCGAc -3'
miRNA:   3'- -AAGCGGU---------ACGag-CGGCgCUAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 27869 0.69 0.37246
Target:  5'- -cUGCCAUGCgUCGCCcuucaacuggaaguuGCcGUCAGCGGu -3'
miRNA:   3'- aaGCGGUACG-AGCGG---------------CGcUAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 55592 0.77 0.114324
Target:  5'- -gCGCuCGUGCagGCgGCGAUCGGCGAa -3'
miRNA:   3'- aaGCG-GUACGagCGgCGCUAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 8736 0.72 0.236736
Target:  5'- aUCGCCgauaucauuGUGCagGCUGCGAuguUCGGCGAa -3'
miRNA:   3'- aAGCGG---------UACGagCGGCGCU---AGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 50929 0.72 0.242911
Target:  5'- -cCGCC--GUUUGCCGCG-UCAGCGAc -3'
miRNA:   3'- aaGCGGuaCGAGCGGCGCuAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 53506 0.72 0.249219
Target:  5'- gUCGCCA---UCGCCGUGuucAUCGGCGAa -3'
miRNA:   3'- aAGCGGUacgAGCGGCGC---UAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 16447 0.71 0.262241
Target:  5'- gUCGCCAUGCUcgaCGCCGgGAuuuggaccUCGGCc- -3'
miRNA:   3'- aAGCGGUACGA---GCGGCgCU--------AGUCGcu -5'
22729 5' -58.2 NC_005091.1 + 50709 0.71 0.278591
Target:  5'- gUCGCCAUGCUUguaccgcuccggauaGCCGCGcgCA-CGAc -3'
miRNA:   3'- aAGCGGUACGAG---------------CGGCGCuaGUcGCU- -5'
22729 5' -58.2 NC_005091.1 + 34758 0.7 0.319873
Target:  5'- gUCgGCCAUGUcccgGCCGCGcgcGUCGGCGAu -3'
miRNA:   3'- aAG-CGGUACGag--CGGCGC---UAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 21506 0.69 0.343808
Target:  5'- aUCGCCgcaagcGUGCUCuGCCGCGucgccUCGGCu- -3'
miRNA:   3'- aAGCGG------UACGAG-CGGCGCu----AGUCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.