miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22729 5' -58.2 NC_005091.1 + 21506 0.69 0.343808
Target:  5'- aUCGCCgcaagcGUGCUCuGCCGCGucgccUCGGCu- -3'
miRNA:   3'- aAGCGG------UACGAG-CGGCGCu----AGUCGcu -5'
22729 5' -58.2 NC_005091.1 + 7065 0.67 0.471569
Target:  5'- -cCGCCAgcaGCUCGaugaCGCGcggGUCGGCGu -3'
miRNA:   3'- aaGCGGUa--CGAGCg---GCGC---UAGUCGCu -5'
22729 5' -58.2 NC_005091.1 + 19546 0.67 0.461638
Target:  5'- -aCGCCGcagGC-CGUCGUGuUCGGCGAu -3'
miRNA:   3'- aaGCGGUa--CGaGCGGCGCuAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 24391 0.69 0.386494
Target:  5'- --gGCCA-GCcuaUCGCCGCGAUCaaGGCGc -3'
miRNA:   3'- aagCGGUaCG---AGCGGCGCUAG--UCGCu -5'
22729 5' -58.2 NC_005091.1 + 12209 0.69 0.377682
Target:  5'- aUCGCCAucaucgUGCUCGCCGUGccguUCcGCa- -3'
miRNA:   3'- aAGCGGU------ACGAGCGGCGCu---AGuCGcu -5'
22729 5' -58.2 NC_005091.1 + 17720 0.7 0.32771
Target:  5'- --aGCCggGCaUgGCCGCGAuuaUCGGCGAc -3'
miRNA:   3'- aagCGGuaCG-AgCGGCGCU---AGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 43875 0.7 0.304622
Target:  5'- --aGCCAUGCUCuaUGCGcUCGGCGc -3'
miRNA:   3'- aagCGGUACGAGcgGCGCuAGUCGCu -5'
22729 5' -58.2 NC_005091.1 + 47070 0.72 0.25178
Target:  5'- -aUGCCAgccagucgaugaagaUGCcgCGCuCGCGGUCAGCGGg -3'
miRNA:   3'- aaGCGGU---------------ACGa-GCG-GCGCUAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 2082 0.72 0.242911
Target:  5'- gUUCGCCA-GCaUgGCCGCGA-CAGCGu -3'
miRNA:   3'- -AAGCGGUaCG-AgCGGCGCUaGUCGCu -5'
22729 5' -58.2 NC_005091.1 + 25330 0.67 0.481607
Target:  5'- -aCGCCGUGggCGaCGUGAUCGGCc- -3'
miRNA:   3'- aaGCGGUACgaGCgGCGCUAGUCGcu -5'
22729 5' -58.2 NC_005091.1 + 49551 0.67 0.491748
Target:  5'- aUUgGCC-UGCUCGUCGCGcUCGuGCGc -3'
miRNA:   3'- -AAgCGGuACGAGCGGCGCuAGU-CGCu -5'
22729 5' -58.2 NC_005091.1 + 36494 0.67 0.495831
Target:  5'- -gCGCCGUGCU-GCgGCGGccggaucgaagcggaUCAGCGc -3'
miRNA:   3'- aaGCGGUACGAgCGgCGCU---------------AGUCGCu -5'
22729 5' -58.2 NC_005091.1 + 40645 0.75 0.150633
Target:  5'- --gGCCGUGCUCGgCGCGGgauaccgacUCGGCGGc -3'
miRNA:   3'- aagCGGUACGAGCgGCGCU---------AGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 12442 0.66 0.554441
Target:  5'- cUgGCCGcGCUCGUCGCGGUCuuuuuguauAGCc- -3'
miRNA:   3'- aAgCGGUaCGAGCGGCGCUAG---------UCGcu -5'
22729 5' -58.2 NC_005091.1 + 29695 0.66 0.53323
Target:  5'- --gGCCcucccGCUCGcCCGCaccgaGAUCGGCGAg -3'
miRNA:   3'- aagCGGua---CGAGC-GGCG-----CUAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 29547 0.66 0.53323
Target:  5'- cUCGCCcgGUUCGCCGaaccgGGaCAGaCGAc -3'
miRNA:   3'- aAGCGGuaCGAGCGGCg----CUaGUC-GCU- -5'
22729 5' -58.2 NC_005091.1 + 16340 0.66 0.512316
Target:  5'- cUCGgCGcGUUCGUCGCGAgCGGCGc -3'
miRNA:   3'- aAGCgGUaCGAGCGGCGCUaGUCGCu -5'
22729 5' -58.2 NC_005091.1 + 20023 0.66 0.512316
Target:  5'- cUUCGCCAcgaacgGCguuaucacUGCCGUGggCGGCGAu -3'
miRNA:   3'- -AAGCGGUa-----CGa-------GCGGCGCuaGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 54681 0.66 0.512316
Target:  5'- -gCGCCAUGCUgGaauCGCG--CGGCGAa -3'
miRNA:   3'- aaGCGGUACGAgCg--GCGCuaGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 18229 0.66 0.511279
Target:  5'- aUCGCCGggccgcgaaGCUCgGCCGaccgacguguucuCGAUCAGCGu -3'
miRNA:   3'- aAGCGGUa--------CGAG-CGGC-------------GCUAGUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.