miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22730 3' -53.2 NC_005091.1 + 36810 0.66 0.809481
Target:  5'- -----gACGACGUUgaUGGCgacgGCGAGCCg -3'
miRNA:   3'- cagagaUGUUGCGA--GCCGa---UGCUCGG- -5'
22730 3' -53.2 NC_005091.1 + 23472 0.66 0.828195
Target:  5'- gGUCUgUucgGCGGCGCugcgUCGGCUGCcccGGCUg -3'
miRNA:   3'- -CAGAgA---UGUUGCG----AGCCGAUGc--UCGG- -5'
22730 3' -53.2 NC_005091.1 + 26489 0.66 0.83724
Target:  5'- -----gGCAACGCa-GGCUGCGGcuGCCg -3'
miRNA:   3'- cagagaUGUUGCGagCCGAUGCU--CGG- -5'
22730 3' -53.2 NC_005091.1 + 36081 0.66 0.846065
Target:  5'- --gUCUGCAACGUguUCGGCauUGcGCCg -3'
miRNA:   3'- cagAGAUGUUGCG--AGCCGauGCuCGG- -5'
22730 3' -53.2 NC_005091.1 + 26464 0.66 0.846065
Target:  5'- -gCUCUGCc-UGCUCGGCgacuUGCGcuucaaGGCCa -3'
miRNA:   3'- caGAGAUGuuGCGAGCCG----AUGC------UCGG- -5'
22730 3' -53.2 NC_005091.1 + 2466 0.66 0.846065
Target:  5'- -----aGCAagGCGUUCGGCUACGGGa- -3'
miRNA:   3'- cagagaUGU--UGCGAGCCGAUGCUCgg -5'
22730 3' -53.2 NC_005091.1 + 33754 0.66 0.818938
Target:  5'- cGUCaUC-GCGAUGC-CGGCUugGAuGCUc -3'
miRNA:   3'- -CAG-AGaUGUUGCGaGCCGAugCU-CGG- -5'
22730 3' -53.2 NC_005091.1 + 52003 0.66 0.809481
Target:  5'- gGUCggcgCUACGGCGUcgcauuUCGGg-GCGAGCg -3'
miRNA:   3'- -CAGa---GAUGUUGCG------AGCCgaUGCUCGg -5'
22730 3' -53.2 NC_005091.1 + 52327 0.67 0.759567
Target:  5'- cGUCgcaUGCGACGUUgaGGCgacggGCGAGCa -3'
miRNA:   3'- -CAGag-AUGUUGCGAg-CCGa----UGCUCGg -5'
22730 3' -53.2 NC_005091.1 + 49822 0.67 0.759567
Target:  5'- uGUCUCgUACGacucACGCaCGGCcgACGuGCCc -3'
miRNA:   3'- -CAGAG-AUGU----UGCGaGCCGa-UGCuCGG- -5'
22730 3' -53.2 NC_005091.1 + 26883 0.67 0.759567
Target:  5'- uGUCaggcgCUGCugauGCGCUCgaucaGGCgaagacGCGAGCCg -3'
miRNA:   3'- -CAGa----GAUGu---UGCGAG-----CCGa-----UGCUCGG- -5'
22730 3' -53.2 NC_005091.1 + 56917 0.67 0.803715
Target:  5'- uUCUCUGCAcgaucggcaauugccGuCGCU-GGCUGCGcggugcAGCCa -3'
miRNA:   3'- cAGAGAUGU---------------U-GCGAgCCGAUGC------UCGG- -5'
22730 3' -53.2 NC_005091.1 + 35463 0.68 0.738586
Target:  5'- uGUCcgUACGcCGCUCGGagACGAGCUg -3'
miRNA:   3'- -CAGagAUGUuGCGAGCCgaUGCUCGG- -5'
22730 3' -53.2 NC_005091.1 + 31190 0.68 0.728997
Target:  5'- cUC-CUGCAACGacaugccgccgaugaUCGGCUGCucGCCg -3'
miRNA:   3'- cAGaGAUGUUGCg--------------AGCCGAUGcuCGG- -5'
22730 3' -53.2 NC_005091.1 + 50788 0.68 0.717168
Target:  5'- -gCUUgGCAACGCUCGGCgcGCGuuGCa -3'
miRNA:   3'- caGAGaUGUUGCGAGCCGa-UGCu-CGg -5'
22730 3' -53.2 NC_005091.1 + 18978 0.68 0.749138
Target:  5'- -----cGCGAUGCUCGGCggaauCGuGCCg -3'
miRNA:   3'- cagagaUGUUGCGAGCCGau---GCuCGG- -5'
22730 3' -53.2 NC_005091.1 + 19629 0.68 0.727926
Target:  5'- uGUCg--GCGGCGCUCGGCccgaaaGCGcAGCa -3'
miRNA:   3'- -CAGagaUGUUGCGAGCCGa-----UGC-UCGg -5'
22730 3' -53.2 NC_005091.1 + 25603 0.68 0.706324
Target:  5'- uUCUCggcuucgcGCAACaGCUCGGCgAUGAGUa -3'
miRNA:   3'- cAGAGa-------UGUUG-CGAGCCGaUGCUCGg -5'
22730 3' -53.2 NC_005091.1 + 11551 0.68 0.695405
Target:  5'- aUC-CU-CGGCGCauUCGGCUAC-AGCCg -3'
miRNA:   3'- cAGaGAuGUUGCG--AGCCGAUGcUCGG- -5'
22730 3' -53.2 NC_005091.1 + 46217 0.68 0.695405
Target:  5'- cGUCUCguaaucauCGGCGUcCGGC-ACGAGCa -3'
miRNA:   3'- -CAGAGau------GUUGCGaGCCGaUGCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.