miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22730 3' -53.2 NC_005091.1 + 2466 0.66 0.846065
Target:  5'- -----aGCAagGCGUUCGGCUACGGGa- -3'
miRNA:   3'- cagagaUGU--UGCGAGCCGAUGCUCgg -5'
22730 3' -53.2 NC_005091.1 + 4813 0.71 0.573584
Target:  5'- uUCUCUGuucGCGCUCGGCgcgGCG-GCa -3'
miRNA:   3'- cAGAGAUgu-UGCGAGCCGa--UGCuCGg -5'
22730 3' -53.2 NC_005091.1 + 6695 0.69 0.662321
Target:  5'- cGUC-CUuaaggccggccaACAcCGCUUGGCUGCGGucGCCg -3'
miRNA:   3'- -CAGaGA------------UGUuGCGAGCCGAUGCU--CGG- -5'
22730 3' -53.2 NC_005091.1 + 6968 0.75 0.346304
Target:  5'- -gCUCUACAACGCcgaccCGGCgucauCGAGCUg -3'
miRNA:   3'- caGAGAUGUUGCGa----GCCGau---GCUCGG- -5'
22730 3' -53.2 NC_005091.1 + 7398 0.71 0.562617
Target:  5'- --gUCUGguGCGcCUCGGCUugguCGAGCUg -3'
miRNA:   3'- cagAGAUguUGC-GAGCCGAu---GCUCGG- -5'
22730 3' -53.2 NC_005091.1 + 10224 0.74 0.363405
Target:  5'- ----gUGCGGCGCUCGGC-GCGuGCCg -3'
miRNA:   3'- cagagAUGUUGCGAGCCGaUGCuCGG- -5'
22730 3' -53.2 NC_005091.1 + 11551 0.68 0.695405
Target:  5'- aUC-CU-CGGCGCauUCGGCUAC-AGCCg -3'
miRNA:   3'- cAGaGAuGUUGCG--AGCCGAUGcUCGG- -5'
22730 3' -53.2 NC_005091.1 + 15990 0.72 0.47755
Target:  5'- -gCUCUGCGAUGCgaCGGCUACaucggucaGGCCg -3'
miRNA:   3'- caGAGAUGUUGCGa-GCCGAUGc-------UCGG- -5'
22730 3' -53.2 NC_005091.1 + 18978 0.68 0.749138
Target:  5'- -----cGCGAUGCUCGGCggaauCGuGCCg -3'
miRNA:   3'- cagagaUGUUGCGAGCCGau---GCuCGG- -5'
22730 3' -53.2 NC_005091.1 + 19629 0.68 0.727926
Target:  5'- uGUCg--GCGGCGCUCGGCccgaaaGCGcAGCa -3'
miRNA:   3'- -CAGagaUGUUGCGAGCCGa-----UGC-UCGg -5'
22730 3' -53.2 NC_005091.1 + 21217 0.74 0.372172
Target:  5'- uUCUagaaUUGCAGCGCaggCGGUUGCGAGCa -3'
miRNA:   3'- cAGA----GAUGUUGCGa--GCCGAUGCUCGg -5'
22730 3' -53.2 NC_005091.1 + 21520 0.69 0.640102
Target:  5'- -gCUCUGCcGCGUcgccUCGGCUugGuccgggguguAGCCg -3'
miRNA:   3'- caGAGAUGuUGCG----AGCCGAugC----------UCGG- -5'
22730 3' -53.2 NC_005091.1 + 22651 0.71 0.562617
Target:  5'- ---aCUACGAgGUUCGGCUGauAGCCg -3'
miRNA:   3'- cagaGAUGUUgCGAGCCGAUgcUCGG- -5'
22730 3' -53.2 NC_005091.1 + 23472 0.66 0.828195
Target:  5'- gGUCUgUucgGCGGCGCugcgUCGGCUGCcccGGCUg -3'
miRNA:   3'- -CAGAgA---UGUUGCG----AGCCGAUGc--UCGG- -5'
22730 3' -53.2 NC_005091.1 + 25603 0.68 0.706324
Target:  5'- uUCUCggcuucgcGCAACaGCUCGGCgAUGAGUa -3'
miRNA:   3'- cAGAGa-------UGUUG-CGAGCCGaUGCUCGg -5'
22730 3' -53.2 NC_005091.1 + 26464 0.66 0.846065
Target:  5'- -gCUCUGCc-UGCUCGGCgacuUGCGcuucaaGGCCa -3'
miRNA:   3'- caGAGAUGuuGCGAGCCG----AUGC------UCGG- -5'
22730 3' -53.2 NC_005091.1 + 26489 0.66 0.83724
Target:  5'- -----gGCAACGCa-GGCUGCGGcuGCCg -3'
miRNA:   3'- cagagaUGUUGCGagCCGAUGCU--CGG- -5'
22730 3' -53.2 NC_005091.1 + 26883 0.67 0.759567
Target:  5'- uGUCaggcgCUGCugauGCGCUCgaucaGGCgaagacGCGAGCCg -3'
miRNA:   3'- -CAGa----GAUGu---UGCGAG-----CCGa-----UGCUCGG- -5'
22730 3' -53.2 NC_005091.1 + 31190 0.68 0.728997
Target:  5'- cUC-CUGCAACGacaugccgccgaugaUCGGCUGCucGCCg -3'
miRNA:   3'- cAGaGAUGUUGCg--------------AGCCGAUGcuCGG- -5'
22730 3' -53.2 NC_005091.1 + 33754 0.66 0.818938
Target:  5'- cGUCaUC-GCGAUGC-CGGCUugGAuGCUc -3'
miRNA:   3'- -CAG-AGaUGUUGCGaGCCGAugCU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.