miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22730 5' -56.2 NC_005091.1 + 26923 0.66 0.631644
Target:  5'- -cGGCCuUCGCCUGuuugacuuGGUGGCGAGAGa -3'
miRNA:   3'- caCCGGcGGCGGAC--------UCGUCGUUUUUa -5'
22730 5' -56.2 NC_005091.1 + 16032 0.66 0.620439
Target:  5'- -cGuGCUGCCGCCggccGGCGGCAc---- -3'
miRNA:   3'- caC-CGGCGGCGGac--UCGUCGUuuuua -5'
22730 5' -56.2 NC_005091.1 + 53105 0.66 0.609244
Target:  5'- -cGGCUGCCGCgCUGGGU--CAAGAc- -3'
miRNA:   3'- caCCGGCGGCG-GACUCGucGUUUUua -5'
22730 5' -56.2 NC_005091.1 + 37261 0.66 0.586925
Target:  5'- -aGGCCGCCGCCa-AGUAcCGAAAGc -3'
miRNA:   3'- caCCGGCGGCGGacUCGUcGUUUUUa -5'
22730 5' -56.2 NC_005091.1 + 4087 0.66 0.586925
Target:  5'- --aGCCGCC-CCgaaGGGCGGCGAAAc- -3'
miRNA:   3'- cacCGGCGGcGGa--CUCGUCGUUUUua -5'
22730 5' -56.2 NC_005091.1 + 16115 0.66 0.57582
Target:  5'- uUGuGCCGCCgGCCggcGGCAGCAc---- -3'
miRNA:   3'- cAC-CGGCGG-CGGac-UCGUCGUuuuua -5'
22730 5' -56.2 NC_005091.1 + 10897 0.67 0.542827
Target:  5'- -cGGCgGCCgGCCUGua-GGCAAAAAg -3'
miRNA:   3'- caCCGgCGG-CGGACucgUCGUUUUUa -5'
22730 5' -56.2 NC_005091.1 + 25159 0.67 0.542827
Target:  5'- cGUGGCCGCCgaucgguugaacGCCgcgcuuGCGGCAAu--- -3'
miRNA:   3'- -CACCGGCGG------------CGGacu---CGUCGUUuuua -5'
22730 5' -56.2 NC_005091.1 + 40547 0.67 0.521179
Target:  5'- -aGGUCGCCGCCgccGAGuCGGUAu---- -3'
miRNA:   3'- caCCGGCGGCGGa--CUC-GUCGUuuuua -5'
22730 5' -56.2 NC_005091.1 + 52118 0.67 0.521179
Target:  5'- -cGGCCGUCGCCggcgcgGGGCGcguuGCGGAc-- -3'
miRNA:   3'- caCCGGCGGCGGa-----CUCGU----CGUUUuua -5'
22730 5' -56.2 NC_005091.1 + 26557 0.67 0.510481
Target:  5'- aGUGGCCuugaagcgcaaGUCGCC-GAGCAGgCAGAGc- -3'
miRNA:   3'- -CACCGG-----------CGGCGGaCUCGUC-GUUUUua -5'
22730 5' -56.2 NC_005091.1 + 55065 0.68 0.458495
Target:  5'- -gGGCCGCCcgGCCggacgagGGGC-GCAGAAAa -3'
miRNA:   3'- caCCGGCGG--CGGa------CUCGuCGUUUUUa -5'
22730 5' -56.2 NC_005091.1 + 32028 0.69 0.437514
Target:  5'- -cGGcCCGUCGCCUuggcgagcgacgcGAGCAGCAc---- -3'
miRNA:   3'- caCC-GGCGGCGGA-------------CUCGUCGUuuuua -5'
22730 5' -56.2 NC_005091.1 + 23617 0.69 0.428692
Target:  5'- --cGCUGCCGCCgauGGCAcGCAGAAAUg -3'
miRNA:   3'- cacCGGCGGCGGac-UCGU-CGUUUUUA- -5'
22730 5' -56.2 NC_005091.1 + 7098 0.69 0.400063
Target:  5'- -cGGCCGCCGCUgc--CGGCAAGAc- -3'
miRNA:   3'- caCCGGCGGCGGacucGUCGUUUUua -5'
22730 5' -56.2 NC_005091.1 + 11498 0.71 0.33821
Target:  5'- cGUGGCCGCCGCgaaacagGGGCAGgcCGAAGc- -3'
miRNA:   3'- -CACCGGCGGCGga-----CUCGUC--GUUUUua -5'
22730 5' -56.2 NC_005091.1 + 26224 0.71 0.33821
Target:  5'- -cGGCgGCagcuucgGCCUGAGCGGCAGcccGAAUa -3'
miRNA:   3'- caCCGgCGg------CGGACUCGUCGUU---UUUA- -5'
22730 5' -56.2 NC_005091.1 + 4019 0.71 0.306114
Target:  5'- cGUGGCgGCCGCUUcgaGAGCAaGCGcGAAUg -3'
miRNA:   3'- -CACCGgCGGCGGA---CUCGU-CGUuUUUA- -5'
22730 5' -56.2 NC_005091.1 + 26601 0.77 0.1402
Target:  5'- -cGGCCGCCGCCggccgccgcAGCAGCAAGc-- -3'
miRNA:   3'- caCCGGCGGCGGac-------UCGUCGUUUuua -5'
22730 5' -56.2 NC_005091.1 + 53365 1.05 0.001226
Target:  5'- uGUGGCCGCCGCCUGAGCAGCAAAAAUc -3'
miRNA:   3'- -CACCGGCGGCGGACUCGUCGUUUUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.