miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22731 3' -51.3 NC_005091.1 + 34467 0.69 0.808216
Target:  5'- cGCCG-CGCGGucCCAcucgGCagUCGCCa -3'
miRNA:   3'- -UGGCuGUGCCu-GGUaaa-CGaaAGCGG- -5'
22731 3' -51.3 NC_005091.1 + 48728 0.68 0.835405
Target:  5'- -gCGACACGGagauacgGCCAUgcgUUGCgggcaCGCCa -3'
miRNA:   3'- ugGCUGUGCC-------UGGUA---AACGaaa--GCGG- -5'
22731 3' -51.3 NC_005091.1 + 45658 0.68 0.832675
Target:  5'- aGCCGACGCcGGCCAgcuucacaucgGCgacccgaucUUCGCCg -3'
miRNA:   3'- -UGGCUGUGcCUGGUaaa--------CGa--------AAGCGG- -5'
22731 3' -51.3 NC_005091.1 + 26440 0.68 0.827156
Target:  5'- gACCGcGCGCGGGCCGccgggGCUgccaUCGUa -3'
miRNA:   3'- -UGGC-UGUGCCUGGUaaa--CGAa---AGCGg -5'
22731 3' -51.3 NC_005091.1 + 52773 0.68 0.827156
Target:  5'- aGCCGucGCACuGGCCGgcgUGCg--CGCCc -3'
miRNA:   3'- -UGGC--UGUGcCUGGUaa-ACGaaaGCGG- -5'
22731 3' -51.3 NC_005091.1 + 25482 0.68 0.817788
Target:  5'- cGCCGAUAUGGGCUucgcggacGCguggaccaagUUCGCCg -3'
miRNA:   3'- -UGGCUGUGCCUGGuaaa----CGa---------AAGCGG- -5'
22731 3' -51.3 NC_005091.1 + 17926 0.69 0.788507
Target:  5'- gGCCGAUAgCGGAaCGUUUGU---CGCCg -3'
miRNA:   3'- -UGGCUGU-GCCUgGUAAACGaaaGCGG- -5'
22731 3' -51.3 NC_005091.1 + 10072 0.67 0.862397
Target:  5'- uUCGAgGCGGugCAggUGCUUg-GCUg -3'
miRNA:   3'- uGGCUgUGCCugGUaaACGAAagCGG- -5'
22731 3' -51.3 NC_005091.1 + 2196 0.67 0.862397
Target:  5'- uACCGGCaccaucaguugcGCGGACUcgUUGagaUCGCUg -3'
miRNA:   3'- -UGGCUG------------UGCCUGGuaAACgaaAGCGG- -5'
22731 3' -51.3 NC_005091.1 + 31918 0.67 0.886236
Target:  5'- -aCGACGCGGGCgAacgugGCUgcUGCCa -3'
miRNA:   3'- ugGCUGUGCCUGgUaaa--CGAaaGCGG- -5'
22731 3' -51.3 NC_005091.1 + 1543 0.67 0.893649
Target:  5'- gGCCGGCcgcCGGAUCGUccgGCUUgucuucgaGCCa -3'
miRNA:   3'- -UGGCUGu--GCCUGGUAaa-CGAAag------CGG- -5'
22731 3' -51.3 NC_005091.1 + 6581 0.66 0.91422
Target:  5'- gAUCGAguCGGgcggcACCAUgcggaUGCgUUCGCCa -3'
miRNA:   3'- -UGGCUguGCC-----UGGUAa----ACGaAAGCGG- -5'
22731 3' -51.3 NC_005091.1 + 7472 0.66 0.91422
Target:  5'- aGCCGAgGCGcaccaGACCAgucGCUUcguacUUGCCg -3'
miRNA:   3'- -UGGCUgUGC-----CUGGUaaaCGAA-----AGCGG- -5'
22731 3' -51.3 NC_005091.1 + 51181 0.66 0.926511
Target:  5'- cCCGGCACGGugCAguuaUGCcggUUUaCCg -3'
miRNA:   3'- uGGCUGUGCCugGUaa--ACGa--AAGcGG- -5'
22731 3' -51.3 NC_005091.1 + 33168 0.72 0.614487
Target:  5'- gGCCGACAacaaACCGUUUGCUUUUuCCa -3'
miRNA:   3'- -UGGCUGUgcc-UGGUAAACGAAAGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.