miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22731 3' -51.3 NC_005091.1 + 52808 0.66 0.920509
Target:  5'- gGCCGcACGCGGcagcagcaucaaGCCAUU--CaUUCGCCa -3'
miRNA:   3'- -UGGC-UGUGCC------------UGGUAAacGaAAGCGG- -5'
22731 3' -51.3 NC_005091.1 + 18312 0.67 0.886236
Target:  5'- uCCGACguucugcgcGCGGACC---UGCUUguccUCGUCg -3'
miRNA:   3'- uGGCUG---------UGCCUGGuaaACGAA----AGCGG- -5'
22731 3' -51.3 NC_005091.1 + 2866 0.67 0.886236
Target:  5'- cGCaCGAUcguguACGGGCCGUUUGCguggugUGCg -3'
miRNA:   3'- -UG-GCUG-----UGCCUGGUAAACGaaa---GCGg -5'
22731 3' -51.3 NC_005091.1 + 11432 0.67 0.893649
Target:  5'- gGCgGcCACGucGGCCGac-GCUUUCGCCu -3'
miRNA:   3'- -UGgCuGUGC--CUGGUaaaCGAAAGCGG- -5'
22731 3' -51.3 NC_005091.1 + 52089 0.67 0.893649
Target:  5'- cAUUGGCGCGGccguauGCCGUgaaaagGCggccgUCGCCg -3'
miRNA:   3'- -UGGCUGUGCC------UGGUAaa----CGaa---AGCGG- -5'
22731 3' -51.3 NC_005091.1 + 27997 0.66 0.900788
Target:  5'- gGCCGACACGaccuGAUCGUagGUaucCGCCg -3'
miRNA:   3'- -UGGCUGUGC----CUGGUAaaCGaaaGCGG- -5'
22731 3' -51.3 NC_005091.1 + 30589 0.66 0.900788
Target:  5'- gUCGGCACGaGACCGUUcuugaaguccaUGaucgCGCCg -3'
miRNA:   3'- uGGCUGUGC-CUGGUAA-----------ACgaaaGCGG- -5'
22731 3' -51.3 NC_005091.1 + 44692 0.66 0.907646
Target:  5'- cUUGACGCGGAUCAg--Ga--UCGCCu -3'
miRNA:   3'- uGGCUGUGCCUGGUaaaCgaaAGCGG- -5'
22731 3' -51.3 NC_005091.1 + 7963 0.66 0.920509
Target:  5'- gACUGACAUGGaagucGCCAUccaagcggGCUcgUGCCg -3'
miRNA:   3'- -UGGCUGUGCC-----UGGUAaa------CGAaaGCGG- -5'
22731 3' -51.3 NC_005091.1 + 23954 0.67 0.862397
Target:  5'- cGCCGcagauGC-CGGGCCAgugGCUgaaucgUUGCCg -3'
miRNA:   3'- -UGGC-----UGuGCCUGGUaaaCGAa-----AGCGG- -5'
22731 3' -51.3 NC_005091.1 + 22816 0.68 0.836311
Target:  5'- aACCGGCGCGGcgauauCCGga-GCgaaCGCCg -3'
miRNA:   3'- -UGGCUGUGCCu-----GGUaaaCGaaaGCGG- -5'
22731 3' -51.3 NC_005091.1 + 48728 0.68 0.835405
Target:  5'- -gCGACACGGagauacgGCCAUgcgUUGCgggcaCGCCa -3'
miRNA:   3'- ugGCUGUGCC-------UGGUA---AACGaaa--GCGG- -5'
22731 3' -51.3 NC_005091.1 + 52209 0.75 0.452805
Target:  5'- gGCCGACACGGACCcgguagUGCggggCGgCu -3'
miRNA:   3'- -UGGCUGUGCCUGGuaa---ACGaaa-GCgG- -5'
22731 3' -51.3 NC_005091.1 + 18908 0.71 0.656022
Target:  5'- cGCCGAgcaucgcggccaguCGCGGAuUCAcUUGCUgggUCGCCu -3'
miRNA:   3'- -UGGCU--------------GUGCCU-GGUaAACGAa--AGCGG- -5'
22731 3' -51.3 NC_005091.1 + 10021 0.71 0.659383
Target:  5'- cCCGGCACGacggcGACCAcgUUGUUcaUCGCCg -3'
miRNA:   3'- uGGCUGUGC-----CUGGUa-AACGAa-AGCGG- -5'
22731 3' -51.3 NC_005091.1 + 20265 0.71 0.659383
Target:  5'- gGCCGACGCGucGCCGcUUUGCgaguagcCGCCg -3'
miRNA:   3'- -UGGCUGUGCc-UGGU-AAACGaaa----GCGG- -5'
22731 3' -51.3 NC_005091.1 + 25084 0.71 0.692814
Target:  5'- aACCGAUcgGCGG-CCAcggagGCggUCGCCa -3'
miRNA:   3'- -UGGCUG--UGCCuGGUaaa--CGaaAGCGG- -5'
22731 3' -51.3 NC_005091.1 + 31678 0.69 0.769155
Target:  5'- cGCCGACGaaGACCGggUGCgauaccguagccgCGCCg -3'
miRNA:   3'- -UGGCUGUgcCUGGUaaACGaaa----------GCGG- -5'
22731 3' -51.3 NC_005091.1 + 21634 0.69 0.798452
Target:  5'- gACCGGCGgGcGGCCGUUcGUUcgaacgUCGCCc -3'
miRNA:   3'- -UGGCUGUgC-CUGGUAAaCGAa-----AGCGG- -5'
22731 3' -51.3 NC_005091.1 + 34467 0.69 0.808216
Target:  5'- cGCCG-CGCGGucCCAcucgGCagUCGCCa -3'
miRNA:   3'- -UGGCuGUGCCu-GGUaaa-CGaaAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.