miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22731 3' -51.3 NC_005091.1 + 1001 0.66 0.926511
Target:  5'- uGCuCGACGCGGGCgCGc-UGCUcggCGUCa -3'
miRNA:   3'- -UG-GCUGUGCCUG-GUaaACGAaa-GCGG- -5'
22731 3' -51.3 NC_005091.1 + 1543 0.67 0.893649
Target:  5'- gGCCGGCcgcCGGAUCGUccgGCUUgucuucgaGCCa -3'
miRNA:   3'- -UGGCUGu--GCCUGGUAaa-CGAAag------CGG- -5'
22731 3' -51.3 NC_005091.1 + 2196 0.67 0.862397
Target:  5'- uACCGGCaccaucaguugcGCGGACUcgUUGagaUCGCUg -3'
miRNA:   3'- -UGGCUG------------UGCCUGGuaAACgaaAGCGG- -5'
22731 3' -51.3 NC_005091.1 + 2866 0.67 0.886236
Target:  5'- cGCaCGAUcguguACGGGCCGUUUGCguggugUGCg -3'
miRNA:   3'- -UG-GCUG-----UGCCUGGUAAACGaaa---GCGg -5'
22731 3' -51.3 NC_005091.1 + 6581 0.66 0.91422
Target:  5'- gAUCGAguCGGgcggcACCAUgcggaUGCgUUCGCCa -3'
miRNA:   3'- -UGGCUguGCC-----UGGUAa----ACGaAAGCGG- -5'
22731 3' -51.3 NC_005091.1 + 7472 0.66 0.91422
Target:  5'- aGCCGAgGCGcaccaGACCAgucGCUUcguacUUGCCg -3'
miRNA:   3'- -UGGCUgUGC-----CUGGUaaaCGAA-----AGCGG- -5'
22731 3' -51.3 NC_005091.1 + 7963 0.66 0.920509
Target:  5'- gACUGACAUGGaagucGCCAUccaagcggGCUcgUGCCg -3'
miRNA:   3'- -UGGCUGUGCC-----UGGUAaa------CGAaaGCGG- -5'
22731 3' -51.3 NC_005091.1 + 10021 0.71 0.659383
Target:  5'- cCCGGCACGacggcGACCAcgUUGUUcaUCGCCg -3'
miRNA:   3'- uGGCUGUGC-----CUGGUa-AACGAa-AGCGG- -5'
22731 3' -51.3 NC_005091.1 + 10072 0.67 0.862397
Target:  5'- uUCGAgGCGGugCAggUGCUUg-GCUg -3'
miRNA:   3'- uGGCUgUGCCugGUaaACGAAagCGG- -5'
22731 3' -51.3 NC_005091.1 + 11432 0.67 0.893649
Target:  5'- gGCgGcCACGucGGCCGac-GCUUUCGCCu -3'
miRNA:   3'- -UGgCuGUGC--CUGGUaaaCGAAAGCGG- -5'
22731 3' -51.3 NC_005091.1 + 17926 0.69 0.788507
Target:  5'- gGCCGAUAgCGGAaCGUUUGU---CGCCg -3'
miRNA:   3'- -UGGCUGU-GCCUgGUAAACGaaaGCGG- -5'
22731 3' -51.3 NC_005091.1 + 18312 0.67 0.886236
Target:  5'- uCCGACguucugcgcGCGGACC---UGCUUguccUCGUCg -3'
miRNA:   3'- uGGCUG---------UGCCUGGuaaACGAA----AGCGG- -5'
22731 3' -51.3 NC_005091.1 + 18908 0.71 0.656022
Target:  5'- cGCCGAgcaucgcggccaguCGCGGAuUCAcUUGCUgggUCGCCu -3'
miRNA:   3'- -UGGCU--------------GUGCCU-GGUaAACGAa--AGCGG- -5'
22731 3' -51.3 NC_005091.1 + 20265 0.71 0.659383
Target:  5'- gGCCGACGCGucGCCGcUUUGCgaguagcCGCCg -3'
miRNA:   3'- -UGGCUGUGCc-UGGU-AAACGaaa----GCGG- -5'
22731 3' -51.3 NC_005091.1 + 21634 0.69 0.798452
Target:  5'- gACCGGCGgGcGGCCGUUcGUUcgaacgUCGCCc -3'
miRNA:   3'- -UGGCUGUgC-CUGGUAAaCGAa-----AGCGG- -5'
22731 3' -51.3 NC_005091.1 + 22816 0.68 0.836311
Target:  5'- aACCGGCGCGGcgauauCCGga-GCgaaCGCCg -3'
miRNA:   3'- -UGGCUGUGCCu-----GGUaaaCGaaaGCGG- -5'
22731 3' -51.3 NC_005091.1 + 23954 0.67 0.862397
Target:  5'- cGCCGcagauGC-CGGGCCAgugGCUgaaucgUUGCCg -3'
miRNA:   3'- -UGGC-----UGuGCCUGGUaaaCGAa-----AGCGG- -5'
22731 3' -51.3 NC_005091.1 + 25084 0.71 0.692814
Target:  5'- aACCGAUcgGCGG-CCAcggagGCggUCGCCa -3'
miRNA:   3'- -UGGCUG--UGCCuGGUaaa--CGaaAGCGG- -5'
22731 3' -51.3 NC_005091.1 + 25482 0.68 0.817788
Target:  5'- cGCCGAUAUGGGCUucgcggacGCguggaccaagUUCGCCg -3'
miRNA:   3'- -UGGCUGUGCCUGGuaaa----CGa---------AAGCGG- -5'
22731 3' -51.3 NC_005091.1 + 26440 0.68 0.827156
Target:  5'- gACCGcGCGCGGGCCGccgggGCUgccaUCGUa -3'
miRNA:   3'- -UGGC-UGUGCCUGGUaaa--CGAa---AGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.