miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22735 3' -57 NC_005091.1 + 25720 0.66 0.680484
Target:  5'- gCGGCcagcUCGGcGAUCggCUGCCcGCCGc -3'
miRNA:   3'- gGCCGu---AGCU-CUAGuaGGCGGaCGGC- -5'
22735 3' -57 NC_005091.1 + 26666 0.66 0.655913
Target:  5'- cCCGGCGUUGAGcgCAUCaCGCgcgaacaucugguaCgcgaugGCCGc -3'
miRNA:   3'- -GGCCGUAGCUCuaGUAG-GCG--------------Ga-----CGGC- -5'
22735 3' -57 NC_005091.1 + 27799 0.72 0.321205
Target:  5'- gCCGGcCGUCGAGGUaCAcgcgcUCCGUC-GCCGa -3'
miRNA:   3'- -GGCC-GUAGCUCUA-GU-----AGGCGGaCGGC- -5'
22735 3' -57 NC_005091.1 + 27994 0.66 0.680484
Target:  5'- gCCGGCcgacacgaccugAUCGuAGGU-AUCCGCC-GCCa -3'
miRNA:   3'- -GGCCG------------UAGC-UCUAgUAGGCGGaCGGc -5'
22735 3' -57 NC_005091.1 + 28368 0.67 0.616201
Target:  5'- aCCGGCAgcaaggCGaAGGUCAcgcaagCCGCCagcgcgucGCCGg -3'
miRNA:   3'- -GGCCGUa-----GC-UCUAGUa-----GGCGGa-------CGGC- -5'
22735 3' -57 NC_005091.1 + 30298 0.66 0.648407
Target:  5'- aCGuuGUCGAGGUCGaagaCGCCccgGCCGg -3'
miRNA:   3'- gGCcgUAGCUCUAGUag--GCGGa--CGGC- -5'
22735 3' -57 NC_005091.1 + 30513 0.67 0.626935
Target:  5'- cCCGcGUAgCGuAGGUCAUCgGCCgGCCc -3'
miRNA:   3'- -GGC-CGUaGC-UCUAGUAGgCGGaCGGc -5'
22735 3' -57 NC_005091.1 + 33508 0.74 0.244992
Target:  5'- gCCGGCAUCGAuccgCAUCaCGgCUGCCu -3'
miRNA:   3'- -GGCCGUAGCUcua-GUAG-GCgGACGGc -5'
22735 3' -57 NC_005091.1 + 33645 0.68 0.552365
Target:  5'- gCGGCAUCGGGAcuUCA-CCaGCCgcgauaGCCu -3'
miRNA:   3'- gGCCGUAGCUCU--AGUaGG-CGGa-----CGGc -5'
22735 3' -57 NC_005091.1 + 34496 0.68 0.541894
Target:  5'- aUGGUAUCGAc--CGaCCGCCUGUCGa -3'
miRNA:   3'- gGCCGUAGCUcuaGUaGGCGGACGGC- -5'
22735 3' -57 NC_005091.1 + 35807 0.67 0.594782
Target:  5'- aCCGGCAgcuucgCGaAGAagGUCUGCacgGCCGu -3'
miRNA:   3'- -GGCCGUa-----GC-UCUagUAGGCGga-CGGC- -5'
22735 3' -57 NC_005091.1 + 39496 0.68 0.510905
Target:  5'- uUGGCAUgGGGAagacggUCAUCUGCCUcacGCUGc -3'
miRNA:   3'- gGCCGUAgCUCU------AGUAGGCGGA---CGGC- -5'
22735 3' -57 NC_005091.1 + 41158 0.67 0.594782
Target:  5'- aCGGUAUccuugcCGAGGUCAUcgaaacgauacCCGCgUGCCu -3'
miRNA:   3'- gGCCGUA------GCUCUAGUA-----------GGCGgACGGc -5'
22735 3' -57 NC_005091.1 + 44227 0.7 0.432349
Target:  5'- aCCGGCAUaCGccccGAUCAUCUGCUcgGCaCGg -3'
miRNA:   3'- -GGCCGUA-GCu---CUAGUAGGCGGa-CG-GC- -5'
22735 3' -57 NC_005091.1 + 44612 0.72 0.336833
Target:  5'- uCCGGCuugaucgaggCGAGGUCuUCgGCCUuGCCGu -3'
miRNA:   3'- -GGCCGua--------GCUCUAGuAGgCGGA-CGGC- -5'
22735 3' -57 NC_005091.1 + 46042 0.68 0.518073
Target:  5'- gCGGCGggGAGAUCgauuacgacgacccGUUCGCC-GCCGa -3'
miRNA:   3'- gGCCGUagCUCUAG--------------UAGGCGGaCGGC- -5'
22735 3' -57 NC_005091.1 + 48609 0.66 0.680484
Target:  5'- gCGGcCGUCGGGGUCccAUCCGgCgagGCgCGa -3'
miRNA:   3'- gGCC-GUAGCUCUAG--UAGGCgGa--CG-GC- -5'
22735 3' -57 NC_005091.1 + 49550 0.72 0.306126
Target:  5'- aCGGCcgcGUCGGGGgcgucuUCGUaCCGCCUGCgCGg -3'
miRNA:   3'- gGCCG---UAGCUCU------AGUA-GGCGGACG-GC- -5'
22735 3' -57 NC_005091.1 + 50270 0.67 0.584113
Target:  5'- aCCGGCAUUGcggcGAUCGUCUcaGCCaucGUCGg -3'
miRNA:   3'- -GGCCGUAGCu---CUAGUAGG--CGGa--CGGC- -5'
22735 3' -57 NC_005091.1 + 52063 0.68 0.521157
Target:  5'- gCCGcGCGcuUCGAGAUauUCCGCCgcauuggcgcgGCCGu -3'
miRNA:   3'- -GGC-CGU--AGCUCUAguAGGCGGa----------CGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.