miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22735 3' -57 NC_005091.1 + 326 0.8 0.107471
Target:  5'- gCCuGCA-CGAGAUCGUCCGCgUGCUGa -3'
miRNA:   3'- -GGcCGUaGCUCUAGUAGGCGgACGGC- -5'
22735 3' -57 NC_005091.1 + 1385 0.69 0.470795
Target:  5'- cCCGGCGU---GAUCGaCUGCUUGCCGc -3'
miRNA:   3'- -GGCCGUAgcuCUAGUaGGCGGACGGC- -5'
22735 3' -57 NC_005091.1 + 1542 0.73 0.291594
Target:  5'- gCCGGCcgCcGGAUCGUCCGgCUUGUCu -3'
miRNA:   3'- -GGCCGuaGcUCUAGUAGGC-GGACGGc -5'
22735 3' -57 NC_005091.1 + 1686 0.67 0.584113
Target:  5'- uCCGGCAUCGGc--UAUCgGCCUGaaGg -3'
miRNA:   3'- -GGCCGUAGCUcuaGUAGgCGGACggC- -5'
22735 3' -57 NC_005091.1 + 2498 0.67 0.615128
Target:  5'- gCGGCA-CGAGAUCGgcguguuucucaaUCaCGuUCUGCCGc -3'
miRNA:   3'- gGCCGUaGCUCUAGU-------------AG-GC-GGACGGC- -5'
22735 3' -57 NC_005091.1 + 5074 0.7 0.423026
Target:  5'- aCCGGCcUCGGGGUUggCUGCCccUGCgGg -3'
miRNA:   3'- -GGCCGuAGCUCUAGuaGGCGG--ACGgC- -5'
22735 3' -57 NC_005091.1 + 5628 0.7 0.451348
Target:  5'- aCGGUAUUGAcGAgCGUCaggGCCUGCCu -3'
miRNA:   3'- gGCCGUAGCU-CUaGUAGg--CGGACGGc -5'
22735 3' -57 NC_005091.1 + 7087 0.77 0.14904
Target:  5'- -gGGCAUCGAGA-CggCCGCCgcUGCCGg -3'
miRNA:   3'- ggCCGUAGCUCUaGuaGGCGG--ACGGC- -5'
22735 3' -57 NC_005091.1 + 8137 0.77 0.153098
Target:  5'- cCCGGCAUCGAGAUUAcgCGCUacugGCCGu -3'
miRNA:   3'- -GGCCGUAGCUCUAGUagGCGGa---CGGC- -5'
22735 3' -57 NC_005091.1 + 8366 0.7 0.451348
Target:  5'- aCCGGCAUau---UCAUCUGCCggGCCa -3'
miRNA:   3'- -GGCCGUAgcucuAGUAGGCGGa-CGGc -5'
22735 3' -57 NC_005091.1 + 9348 0.66 0.669822
Target:  5'- gCGGCgagcaGUCGAc--CAUUCGCCgGCCGg -3'
miRNA:   3'- gGCCG-----UAGCUcuaGUAGGCGGaCGGC- -5'
22735 3' -57 NC_005091.1 + 10114 0.66 0.659126
Target:  5'- cCCGGCGaugaacaaCGuGGUCG-CCGUCgUGCCGg -3'
miRNA:   3'- -GGCCGUa-------GCuCUAGUaGGCGG-ACGGC- -5'
22735 3' -57 NC_005091.1 + 11202 0.68 0.531489
Target:  5'- gCGGCAUCGGGA-CuUCCGCUUucgggggagGCCc -3'
miRNA:   3'- gGCCGUAGCUCUaGuAGGCGGA---------CGGc -5'
22735 3' -57 NC_005091.1 + 14597 0.66 0.659126
Target:  5'- cCCGGCAUCGAGcggCA--CGCUUaCCGg -3'
miRNA:   3'- -GGCCGUAGCUCua-GUagGCGGAcGGC- -5'
22735 3' -57 NC_005091.1 + 16597 0.71 0.395797
Target:  5'- cUCGGUgcGUCGGGAaugccUCccugcgCCGCCUGCCa -3'
miRNA:   3'- -GGCCG--UAGCUCU-----AGua----GGCGGACGGc -5'
22735 3' -57 NC_005091.1 + 17469 0.66 0.648407
Target:  5'- aCGaGCAcaaUCGAGAUCGUCgCGCggcagaacaUGCCa -3'
miRNA:   3'- gGC-CGU---AGCUCUAGUAG-GCGg--------ACGGc -5'
22735 3' -57 NC_005091.1 + 18174 0.7 0.432349
Target:  5'- cUCGGCAUCGAGAacaUgAUCCuGCgC-GCCGg -3'
miRNA:   3'- -GGCCGUAGCUCU---AgUAGG-CG-GaCGGC- -5'
22735 3' -57 NC_005091.1 + 18522 0.67 0.593713
Target:  5'- cCCGGCGacaauuccgcauuUCGAcuacaCGUCCgGCCUGCUGa -3'
miRNA:   3'- -GGCCGU-------------AGCUcua--GUAGG-CGGACGGC- -5'
22735 3' -57 NC_005091.1 + 23427 0.67 0.631231
Target:  5'- aCCGGCcUCGGGA-CGuggggccuuggcgcuUCCguGCCUGCUGc -3'
miRNA:   3'- -GGCCGuAGCUCUaGU---------------AGG--CGGACGGC- -5'
22735 3' -57 NC_005091.1 + 25655 0.68 0.510905
Target:  5'- gCUGGCcgCGcAGuUCuUCCGCCUGCa- -3'
miRNA:   3'- -GGCCGuaGC-UCuAGuAGGCGGACGgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.