miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22735 3' -57 NC_005091.1 + 52063 0.68 0.521157
Target:  5'- gCCGcGCGcuUCGAGAUauUCCGCCgcauuggcgcgGCCGu -3'
miRNA:   3'- -GGC-CGU--AGCUCUAguAGGCGGa----------CGGC- -5'
22735 3' -57 NC_005091.1 + 49550 0.72 0.306126
Target:  5'- aCGGCcgcGUCGGGGgcgucuUCGUaCCGCCUGCgCGg -3'
miRNA:   3'- gGCCG---UAGCUCU------AGUA-GGCGGACG-GC- -5'
22735 3' -57 NC_005091.1 + 27799 0.72 0.321205
Target:  5'- gCCGGcCGUCGAGGUaCAcgcgcUCCGUC-GCCGa -3'
miRNA:   3'- -GGCC-GUAGCUCUA-GU-----AGGCGGaCGGC- -5'
22735 3' -57 NC_005091.1 + 33508 0.74 0.244992
Target:  5'- gCCGGCAUCGAuccgCAUCaCGgCUGCCu -3'
miRNA:   3'- -GGCCGUAGCUcua-GUAG-GCgGACGGc -5'
22735 3' -57 NC_005091.1 + 8137 0.77 0.153098
Target:  5'- cCCGGCAUCGAGAUUAcgCGCUacugGCCGu -3'
miRNA:   3'- -GGCCGUAGCUCUAGUagGCGGa---CGGC- -5'
22735 3' -57 NC_005091.1 + 7087 0.77 0.14904
Target:  5'- -gGGCAUCGAGA-CggCCGCCgcUGCCGg -3'
miRNA:   3'- ggCCGUAGCUCUaGuaGGCGG--ACGGC- -5'
22735 3' -57 NC_005091.1 + 57720 0.8 0.107471
Target:  5'- gCCuGCA-CGAGAUCGUCCGCgUGCUGa -3'
miRNA:   3'- -GGcCGUaGCUCUAGUAGGCGgACGGC- -5'
22735 3' -57 NC_005091.1 + 25655 0.68 0.510905
Target:  5'- gCUGGCcgCGcAGuUCuUCCGCCUGCa- -3'
miRNA:   3'- -GGCCGuaGC-UCuAGuAGGCGGACGgc -5'
22735 3' -57 NC_005091.1 + 5074 0.7 0.423026
Target:  5'- aCCGGCcUCGGGGUUggCUGCCccUGCgGg -3'
miRNA:   3'- -GGCCGuAGCUCUAGuaGGCGG--ACGgC- -5'
22735 3' -57 NC_005091.1 + 46042 0.68 0.518073
Target:  5'- gCGGCGggGAGAUCgauuacgacgacccGUUCGCC-GCCGa -3'
miRNA:   3'- gGCCGUagCUCUAG--------------UAGGCGGaCGGC- -5'
22735 3' -57 NC_005091.1 + 326 0.8 0.107471
Target:  5'- gCCuGCA-CGAGAUCGUCCGCgUGCUGa -3'
miRNA:   3'- -GGcCGUaGCUCUAGUAGGCGgACGGC- -5'
22735 3' -57 NC_005091.1 + 11202 0.68 0.531489
Target:  5'- gCGGCAUCGGGA-CuUCCGCUUucgggggagGCCc -3'
miRNA:   3'- gGCCGUAGCUCUaGuAGGCGGA---------CGGc -5'
22735 3' -57 NC_005091.1 + 33645 0.68 0.552365
Target:  5'- gCGGCAUCGGGAcuUCA-CCaGCCgcgauaGCCu -3'
miRNA:   3'- gGCCGUAGCUCU--AGUaGG-CGGa-----CGGc -5'
22735 3' -57 NC_005091.1 + 1686 0.67 0.584113
Target:  5'- uCCGGCAUCGGc--UAUCgGCCUGaaGg -3'
miRNA:   3'- -GGCCGUAGCUcuaGUAGgCGGACggC- -5'
22735 3' -57 NC_005091.1 + 50270 0.67 0.584113
Target:  5'- aCCGGCAUUGcggcGAUCGUCUcaGCCaucGUCGg -3'
miRNA:   3'- -GGCCGUAGCu---CUAGUAGG--CGGa--CGGC- -5'
22735 3' -57 NC_005091.1 + 41158 0.67 0.594782
Target:  5'- aCGGUAUccuugcCGAGGUCAUcgaaacgauacCCGCgUGCCu -3'
miRNA:   3'- gGCCGUA------GCUCUAGUA-----------GGCGgACGGc -5'
22735 3' -57 NC_005091.1 + 2498 0.67 0.615128
Target:  5'- gCGGCA-CGAGAUCGgcguguuucucaaUCaCGuUCUGCCGc -3'
miRNA:   3'- gGCCGUaGCUCUAGU-------------AG-GC-GGACGGC- -5'
22735 3' -57 NC_005091.1 + 26666 0.66 0.655913
Target:  5'- cCCGGCGUUGAGcgCAUCaCGCgcgaacaucugguaCgcgaugGCCGc -3'
miRNA:   3'- -GGCCGUAGCUCuaGUAG-GCG--------------Ga-----CGGC- -5'
22735 3' -57 NC_005091.1 + 27994 0.66 0.680484
Target:  5'- gCCGGCcgacacgaccugAUCGuAGGU-AUCCGCC-GCCa -3'
miRNA:   3'- -GGCCG------------UAGC-UCUAgUAGGCGGaCGGc -5'
22735 3' -57 NC_005091.1 + 56203 1.11 0.000611
Target:  5'- uCCGGCAUCGAGAUCAUCCGCCUGCCGg -3'
miRNA:   3'- -GGCCGUAGCUCUAGUAGGCGGACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.