miRNA: 3'- gCUGCUCa-CGAAgU--ACC---UCGUGCAGa -5'
miRNA: 3'- gCUGCUcACGaAGUaCCUCGugCAGA- -5'
miRNA: 3'- -GCUGCUCACGAAGUACCUCGUGCAGA- -5'
miRNA: 3'- -GCUGCUCACGAAGUACCUCGUGCAGA- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 22738 | 5' | -52.9 | NC_005091.1 | + | 47321 | 0.67 | 0.794992 |
|
Target: 5'- uGAUGAGcgGCUUgAuuUGGuugAGCACGUCg -3' miRNA: 3'- gCUGCUCa-CGAAgU--ACC---UCGUGCAGa -5' |
|||||||
| 22738 | 5' | -52.9 | NC_005091.1 | + | 20796 | 0.68 | 0.764716 |
|
Target: 5'- gGACGAuUGU-UCA-GGAGCugGUCUu -3' miRNA: 3'- gCUGCUcACGaAGUaCCUCGugCAGA- -5' |
|||||||
| 22738 | 5' | -52.9 | NC_005091.1 | + | 109 | 1.09 | 0.001782 |
|
Target: 5'- aCGACGAGUGCUUCAUGGAGCACGUCUa -3' miRNA: 3'- -GCUGCUCACGAAGUACCUCGUGCAGA- -5' |
|||||||
| 22738 | 5' | -52.9 | NC_005091.1 | + | 57503 | 1.09 | 0.001782 |
|
Target: 5'- aCGACGAGUGCUUCAUGGAGCACGUCUa -3' miRNA: 3'- -GCUGCUCACGAAGUACCUCGUGCAGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home