miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22832 5' -49.9 NC_005135.1 + 16413 0.67 0.993577
Target:  5'- aUGGGCAcuUGUCCCAcaucacGACCCGcucGCCu- -3'
miRNA:   3'- -ACUUGU--AUAGGGU------UUGGGCuu-CGGcg -5'
22832 5' -49.9 NC_005135.1 + 127330 0.71 0.954788
Target:  5'- cGAACGUcccacuUCUCAAACCC---GCCGCg -3'
miRNA:   3'- aCUUGUAu-----AGGGUUUGGGcuuCGGCG- -5'
22832 5' -49.9 NC_005135.1 + 83878 0.71 0.946248
Target:  5'- gGAACAc-UCCCAGAUCUGGAGCUu- -3'
miRNA:   3'- aCUUGUauAGGGUUUGGGCUUCGGcg -5'
22832 5' -49.9 NC_005135.1 + 72061 0.72 0.931561
Target:  5'- uUGAACAuUAUCCagcacgaAAugCCGAAGCgGUa -3'
miRNA:   3'- -ACUUGU-AUAGGg------UUugGGCUUCGgCG- -5'
22832 5' -49.9 NC_005135.1 + 86192 0.74 0.873114
Target:  5'- cGAGCAUauuguuGUCCCGuuCCCGGaugaauuGGUCGCu -3'
miRNA:   3'- aCUUGUA------UAGGGUuuGGGCU-------UCGGCG- -5'
22832 5' -49.9 NC_005135.1 + 53569 1.13 0.007366
Target:  5'- uUGAACAUAUCCCAAACCCGAAGCCGCu -3'
miRNA:   3'- -ACUUGUAUAGGGUUUGGGCUUCGGCG- -5'
22832 5' -49.9 NC_005135.1 + 39890 0.67 0.993577
Target:  5'- uUGAcuuCAUAUUCgaAAGCCUGAAuGCCGUg -3'
miRNA:   3'- -ACUu--GUAUAGGg-UUUGGGCUU-CGGCG- -5'
22832 5' -49.9 NC_005135.1 + 39186 0.66 0.998554
Target:  5'- -cAGCAaauUUCCuuGCCCuugguGAAGCCGCu -3'
miRNA:   3'- acUUGUau-AGGGuuUGGG-----CUUCGGCG- -5'
22832 5' -49.9 NC_005135.1 + 17355 0.66 0.998554
Target:  5'- cGAGC--GUCUCAGGCCCaGGAGaaGUa -3'
miRNA:   3'- aCUUGuaUAGGGUUUGGG-CUUCggCG- -5'
22832 5' -49.9 NC_005135.1 + 100453 0.66 0.998526
Target:  5'- cUGGugAUAUUCCugaagcuuacaaaAAGCCUGGAGuuGUu -3'
miRNA:   3'- -ACUugUAUAGGG-------------UUUGGGCUUCggCG- -5'
22832 5' -49.9 NC_005135.1 + 32132 0.67 0.996528
Target:  5'- aGAGCGg--CCaguauAACCgCGAacAGCCGCa -3'
miRNA:   3'- aCUUGUauaGGgu---UUGG-GCU--UCGGCG- -5'
22832 5' -49.9 NC_005135.1 + 11566 0.66 0.998259
Target:  5'- aUGGuCAUAUCgCGAACCaucaAAGUCGCu -3'
miRNA:   3'- -ACUuGUAUAGgGUUUGGgc--UUCGGCG- -5'
22832 5' -49.9 NC_005135.1 + 75263 0.66 0.998554
Target:  5'- cGGuCAUAUCCaAGACCguUGAAGUCGUc -3'
miRNA:   3'- aCUuGUAUAGGgUUUGG--GCUUCGGCG- -5'
22832 5' -49.9 NC_005135.1 + 115728 0.66 0.997916
Target:  5'- cGAACAaAUCaCCGAAUCUcGAGCCa- -3'
miRNA:   3'- aCUUGUaUAG-GGUUUGGGcUUCGGcg -5'
22832 5' -49.9 NC_005135.1 + 138271 0.66 0.997386
Target:  5'- gGAAUAUgAUCCUcacccgccaaucaaGAugCCGAuGGCCGUa -3'
miRNA:   3'- aCUUGUA-UAGGG--------------UUugGGCU-UCGGCG- -5'
22832 5' -49.9 NC_005135.1 + 77842 0.72 0.931561
Target:  5'- aGAAC---UCCCAAGCCCGuuaauAGCUGa -3'
miRNA:   3'- aCUUGuauAGGGUUUGGGCu----UCGGCg -5'
22832 5' -49.9 NC_005135.1 + 80328 0.7 0.97476
Target:  5'- cUGAGCGgGUCgCCAAgGCCgGAAGCgGUa -3'
miRNA:   3'- -ACUUGUaUAG-GGUU-UGGgCUUCGgCG- -5'
22832 5' -49.9 NC_005135.1 + 78652 0.7 0.97476
Target:  5'- cGAACGUAUCCac-ACCCGccacaAGGCUGg -3'
miRNA:   3'- aCUUGUAUAGGguuUGGGC-----UUCGGCg -5'
22832 5' -49.9 NC_005135.1 + 147187 0.68 0.990253
Target:  5'- -cGAUAUAUCCUAcACCCuuAGCUGUu -3'
miRNA:   3'- acUUGUAUAGGGUuUGGGcuUCGGCG- -5'
22832 5' -49.9 NC_005135.1 + 65780 0.67 0.996528
Target:  5'- gUGAcGCGUAUUCgGAACUUauuAGCCGCg -3'
miRNA:   3'- -ACU-UGUAUAGGgUUUGGGcu-UCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.