Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22832 | 5' | -49.9 | NC_005135.1 | + | 3970 | 0.66 | 0.997517 |
Target: 5'- aUGAAauacaGUGUCCaauuUAAGCCUGAuguGUCGCg -3' miRNA: 3'- -ACUUg----UAUAGG----GUUUGGGCUu--CGGCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 11566 | 0.66 | 0.998259 |
Target: 5'- aUGGuCAUAUCgCGAACCaucaAAGUCGCu -3' miRNA: 3'- -ACUuGUAUAGgGUUUGGgc--UUCGGCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 14739 | 0.66 | 0.998498 |
Target: 5'- aUGAGCA-AUCCCAAGCCaaaugcuauuugGAAaCCGUg -3' miRNA: 3'- -ACUUGUaUAGGGUUUGGg-----------CUUcGGCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 16413 | 0.67 | 0.993577 |
Target: 5'- aUGGGCAcuUGUCCCAcaucacGACCCGcucGCCu- -3' miRNA: 3'- -ACUUGU--AUAGGGU------UUGGGCuu-CGGcg -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 17355 | 0.66 | 0.998554 |
Target: 5'- cGAGC--GUCUCAGGCCCaGGAGaaGUa -3' miRNA: 3'- aCUUGuaUAGGGUUUGGG-CUUCggCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 32132 | 0.67 | 0.996528 |
Target: 5'- aGAGCGg--CCaguauAACCgCGAacAGCCGCa -3' miRNA: 3'- aCUUGUauaGGgu---UUGG-GCU--UCGGCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 35611 | 0.68 | 0.990253 |
Target: 5'- aGAACGUGUCuaucgaagaCCAAuacACCC-AGGCUGCc -3' miRNA: 3'- aCUUGUAUAG---------GGUU---UGGGcUUCGGCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 39186 | 0.66 | 0.998554 |
Target: 5'- -cAGCAaauUUCCuuGCCCuugguGAAGCCGCu -3' miRNA: 3'- acUUGUau-AGGGuuUGGG-----CUUCGGCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 39890 | 0.67 | 0.993577 |
Target: 5'- uUGAcuuCAUAUUCgaAAGCCUGAAuGCCGUg -3' miRNA: 3'- -ACUu--GUAUAGGg-UUUGGGCUU-CGGCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 50023 | 0.68 | 0.99259 |
Target: 5'- cGAACaAUAUCUCAAacggcuGCCUGAuguuGCCGa -3' miRNA: 3'- aCUUG-UAUAGGGUU------UGGGCUu---CGGCg -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 53569 | 1.13 | 0.007366 |
Target: 5'- uUGAACAUAUCCCAAACCCGAAGCCGCu -3' miRNA: 3'- -ACUUGUAUAGGGUUUGGGCUUCGGCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 55683 | 0.66 | 0.998227 |
Target: 5'- cUGGACAaggcugaaaagguUG-CCCAgcaacaaguuaaGACugCCGAGGCCGCa -3' miRNA: 3'- -ACUUGU-------------AUaGGGU------------UUG--GGCUUCGGCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 65780 | 0.67 | 0.996528 |
Target: 5'- gUGAcGCGUAUUCgGAACUUauuAGCCGCg -3' miRNA: 3'- -ACU-UGUAUAGGgUUUGGGcu-UCGGCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 72061 | 0.72 | 0.931561 |
Target: 5'- uUGAACAuUAUCCagcacgaAAugCCGAAGCgGUa -3' miRNA: 3'- -ACUUGU-AUAGGg------UUugGGCUUCGgCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 75263 | 0.66 | 0.998554 |
Target: 5'- cGGuCAUAUCCaAGACCguUGAAGUCGUc -3' miRNA: 3'- aCUuGUAUAGGgUUUGG--GCUUCGGCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 77842 | 0.72 | 0.931561 |
Target: 5'- aGAAC---UCCCAAGCCCGuuaauAGCUGa -3' miRNA: 3'- aCUUGuauAGGGUUUGGGCu----UCGGCg -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 78652 | 0.7 | 0.97476 |
Target: 5'- cGAACGUAUCCac-ACCCGccacaAGGCUGg -3' miRNA: 3'- aCUUGUAUAGGguuUGGGC-----UUCGGCg -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 80328 | 0.7 | 0.97476 |
Target: 5'- cUGAGCGgGUCgCCAAgGCCgGAAGCgGUa -3' miRNA: 3'- -ACUUGUaUAG-GGUU-UGGgCUUCGgCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 83878 | 0.71 | 0.946248 |
Target: 5'- gGAACAc-UCCCAGAUCUGGAGCUu- -3' miRNA: 3'- aCUUGUauAGGGUUUGGGCUUCGGcg -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 86192 | 0.74 | 0.873114 |
Target: 5'- cGAGCAUauuguuGUCCCGuuCCCGGaugaauuGGUCGCu -3' miRNA: 3'- aCUUGUA------UAGGGUuuGGGCU-------UCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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