Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22834 | 3' | -45.4 | NC_005135.1 | + | 64059 | 1.11 | 0.022866 |
Target: 5'- gAAUACAAAAAUAGCCUCCGAAGAGGCu -3' miRNA: 3'- -UUAUGUUUUUAUCGGAGGCUUCUCCG- -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 4214 | 0.88 | 0.423 |
Target: 5'- --aACAAA---GGCCUCCGAAGAGGCc -3' miRNA: 3'- uuaUGUUUuuaUCGGAGGCUUCUCCG- -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 166604 | 0.88 | 0.423 |
Target: 5'- --aACAAA---GGCCUCCGAAGAGGCc -3' miRNA: 3'- uuaUGUUUuuaUCGGAGGCUUCUCCG- -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 115842 | 0.87 | 0.462305 |
Target: 5'- cAUACAAAAAUGcCCUCCGAAGAGGg -3' miRNA: 3'- uUAUGUUUUUAUcGGAGGCUUCUCCg -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 73477 | 0.86 | 0.535318 |
Target: 5'- -uUACAAAAAUGcCCUCCGAAGAGGg -3' miRNA: 3'- uuAUGUUUUUAUcGGAGGCUUCUCCg -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 34858 | 0.85 | 0.597575 |
Target: 5'- cGUACAAucauaauaaacuccAAAUgugGGCCUCCGGAGAGGCc -3' miRNA: 3'- uUAUGUU--------------UUUA---UCGGAGGCUUCUCCG- -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 172227 | 0.8 | 0.804005 |
Target: 5'- -uUACAAAAA-GGcCCUCCGAAGAGGg -3' miRNA: 3'- uuAUGUUUUUaUC-GGAGGCUUCUCCg -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 16254 | 0.78 | 0.90375 |
Target: 5'- --aACAAAAAgacCCUCCGAAGAGGg -3' miRNA: 3'- uuaUGUUUUUaucGGAGGCUUCUCCg -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 64277 | 0.74 | 0.974799 |
Target: 5'- aAAUGCcugaaguuAAAUAGCCUCUucGGAGGCu -3' miRNA: 3'- -UUAUGuu------UUUAUCGGAGGcuUCUCCG- -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 134151 | 0.74 | 0.979957 |
Target: 5'- --aACAAAAAUGcCCUCCGuAGAGGg -3' miRNA: 3'- uuaUGUUUUUAUcGGAGGCuUCUCCg -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 4416 | 0.73 | 0.987863 |
Target: 5'- --gACGAAAA-GGCCUCUucGGAGGCc -3' miRNA: 3'- uuaUGUUUUUaUCGGAGGcuUCUCCG- -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 28817 | 0.73 | 0.989397 |
Target: 5'- uAUACAAAAAUAGgCUCCGuAGAGc- -3' miRNA: 3'- uUAUGUUUUUAUCgGAGGCuUCUCcg -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 74080 | 0.73 | 0.990776 |
Target: 5'- uGAUACAAAAAaauGcCCUCCGuAGAGGg -3' miRNA: 3'- -UUAUGUUUUUau-C-GGAGGCuUCUCCg -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 67365 | 0.72 | 0.994083 |
Target: 5'- uGUugGcccuUGGCCUCCGAcGAGGUu -3' miRNA: 3'- uUAugUuuuuAUCGGAGGCUuCUCCG- -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 35084 | 0.72 | 0.994944 |
Target: 5'- uAAU-CAAAAcgGGCCUCUccGGAGGCc -3' miRNA: 3'- -UUAuGUUUUuaUCGGAGGcuUCUCCG- -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 30439 | 0.69 | 0.999497 |
Target: 5'- --aGCAAGGAagaaGGCCUCCaaguGAGGCc -3' miRNA: 3'- uuaUGUUUUUa---UCGGAGGcuu-CUCCG- -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 11304 | 0.69 | 0.999601 |
Target: 5'- --gACAAAAAUAGUUUuuGggGAaGCa -3' miRNA: 3'- uuaUGUUUUUAUCGGAggCuuCUcCG- -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 154874 | 0.69 | 0.999686 |
Target: 5'- uGGUACGGGucguGCUUCUcauaGAGGAGGCg -3' miRNA: 3'- -UUAUGUUUuuauCGGAGG----CUUCUCCG- -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 100794 | 0.69 | 0.999686 |
Target: 5'- cGGUGCAccGAAAUAGagaCUCgCGAAggcGAGGCu -3' miRNA: 3'- -UUAUGU--UUUUAUCg--GAG-GCUU---CUCCG- -5' |
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22834 | 3' | -45.4 | NC_005135.1 | + | 25909 | 0.68 | 0.999755 |
Target: 5'- ---uCGAAuaucuGCCUCCGAAaAGGCa -3' miRNA: 3'- uuauGUUUuuau-CGGAGGCUUcUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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