miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22840 3' -53 NC_005135.1 + 88305 0.66 0.975875
Target:  5'- aUGCGaauacuucGCCCAUCuaaaggaauaaUGCCGGUCGGGc -3'
miRNA:   3'- -AUGC--------UGGGUAGuuaa-------ACGGCCGGUCU- -5'
22840 3' -53 NC_005135.1 + 6883 0.66 0.972095
Target:  5'- aUAUGGCCCAUU---UUGCUGGCUu-- -3'
miRNA:   3'- -AUGCUGGGUAGuuaAACGGCCGGucu -5'
22840 3' -53 NC_005135.1 + 79854 0.66 0.96598
Target:  5'- -uUGACCCAuUCA---UGCUGGgCAGAg -3'
miRNA:   3'- auGCUGGGU-AGUuaaACGGCCgGUCU- -5'
22840 3' -53 NC_005135.1 + 86068 0.67 0.951045
Target:  5'- cUGCGACCCAUgAAUcUGuuGaGCCGc- -3'
miRNA:   3'- -AUGCUGGGUAgUUAaACggC-CGGUcu -5'
22840 3' -53 NC_005135.1 + 133636 0.67 0.946718
Target:  5'- cAUGGCCUua-AGUUUGCCGGUuuCAGGg -3'
miRNA:   3'- aUGCUGGGuagUUAAACGGCCG--GUCU- -5'
22840 3' -53 NC_005135.1 + 147154 0.68 0.921373
Target:  5'- cUGCGaACUCAUCcagagUUGCCGGUguGAc -3'
miRNA:   3'- -AUGC-UGGGUAGuua--AACGGCCGguCU- -5'
22840 3' -53 NC_005135.1 + 132255 0.68 0.921373
Target:  5'- uUGCuGGCCuCAUUAAca-GUCGGCCAGAg -3'
miRNA:   3'- -AUG-CUGG-GUAGUUaaaCGGCCGGUCU- -5'
22840 3' -53 NC_005135.1 + 95643 0.68 0.921373
Target:  5'- --aGGCCCuUCAAUUUGCUcGUCAGGu -3'
miRNA:   3'- augCUGGGuAGUUAAACGGcCGGUCU- -5'
22840 3' -53 NC_005135.1 + 133532 0.68 0.921373
Target:  5'- -uCGGCaCCGUCAAUcgaCUGGCCGGAu -3'
miRNA:   3'- auGCUG-GGUAGUUAaacGGCCGGUCU- -5'
22840 3' -53 NC_005135.1 + 90189 0.72 0.762799
Target:  5'- gGCGACCguaGUCAcaaucGCCGGCCAGu -3'
miRNA:   3'- aUGCUGGg--UAGUuaaa-CGGCCGGUCu -5'
22840 3' -53 NC_005135.1 + 59141 0.73 0.723058
Target:  5'- aAUGACUUu---AUUUGCCGGCCGGAu -3'
miRNA:   3'- aUGCUGGGuaguUAAACGGCCGGUCU- -5'
22840 3' -53 NC_005135.1 + 115203 1.08 0.006411
Target:  5'- aUACGACCCAUCAAUUUGCCGGCCAGAa -3'
miRNA:   3'- -AUGCUGGGUAGUUAAACGGCCGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.