miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22841 3' -50 NC_005135.1 + 166742 0.66 0.997253
Target:  5'- cGACAGCAGCgAuGGCGCUGcUUCGccAGCa -3'
miRNA:   3'- -UUGUUGUUGgU-CUGUGACcAGGU--UCG- -5'
22841 3' -50 NC_005135.1 + 132471 0.66 0.997253
Target:  5'- uGCAGCAACCAGGCGCga-UUCGAu- -3'
miRNA:   3'- uUGUUGUUGGUCUGUGaccAGGUUcg -5'
22841 3' -50 NC_005135.1 + 54983 0.66 0.997158
Target:  5'- uACGACaAACCAGAacuucuucaccaGCUGGagUAAGCg -3'
miRNA:   3'- uUGUUG-UUGGUCUg-----------UGACCagGUUCG- -5'
22841 3' -50 NC_005135.1 + 863 0.66 0.996165
Target:  5'- aAGC-GCAA--AGACGCUGGUCCGAa- -3'
miRNA:   3'- -UUGuUGUUggUCUGUGACCAGGUUcg -5'
22841 3' -50 NC_005135.1 + 70217 0.67 0.99389
Target:  5'- uGCAAUaAGCCAGACuCUG--CCAAGCu -3'
miRNA:   3'- uUGUUG-UUGGUCUGuGACcaGGUUCG- -5'
22841 3' -50 NC_005135.1 + 76140 0.67 0.990639
Target:  5'- uACGAaaaaGGCCuAGACAUU-GUCCAGGCc -3'
miRNA:   3'- uUGUUg---UUGG-UCUGUGAcCAGGUUCG- -5'
22841 3' -50 NC_005135.1 + 104699 0.68 0.98435
Target:  5'- -cCGAUGACCGGuccUACUGG-CCAGGUa -3'
miRNA:   3'- uuGUUGUUGGUCu--GUGACCaGGUUCG- -5'
22841 3' -50 NC_005135.1 + 55425 0.69 0.979741
Target:  5'- uACGAUGGCCAGAUGCUGauggacaugcguUCCAAGUa -3'
miRNA:   3'- uUGUUGUUGGUCUGUGACc-----------AGGUUCG- -5'
22841 3' -50 NC_005135.1 + 5909 0.69 0.977837
Target:  5'- cGGCAugGACuCAGACgaugGCUGGUUCAAa- -3'
miRNA:   3'- -UUGUugUUG-GUCUG----UGACCAGGUUcg -5'
22841 3' -50 NC_005135.1 + 40026 0.69 0.972503
Target:  5'- uGACGAUAACauuuGGCaugggaacuaACUGGUUCGAGCg -3'
miRNA:   3'- -UUGUUGUUGgu--CUG----------UGACCAGGUUCG- -5'
22841 3' -50 NC_005135.1 + 123429 0.7 0.966299
Target:  5'- cAGCAAUAuucCCGGGCuAUUGGUCaGAGCa -3'
miRNA:   3'- -UUGUUGUu--GGUCUG-UGACCAGgUUCG- -5'
22841 3' -50 NC_005135.1 + 90379 0.74 0.844357
Target:  5'- uGCGACAACCAuGACGCcacuuaaaacuaaguUGGcuaUCCAGGCu -3'
miRNA:   3'- uUGUUGUUGGU-CUGUG---------------ACC---AGGUUCG- -5'
22841 3' -50 NC_005135.1 + 120934 1.1 0.008849
Target:  5'- gAACAACAACCAGACACUGGUCCAAGCu -3'
miRNA:   3'- -UUGUUGUUGGUCUGUGACCAGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.