miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22850 5' -49.4 NC_005135.1 + 107559 0.66 0.998557
Target:  5'- uUGGUuaccAGCCGGgUUgAGGUauuuuACACCGUa -3'
miRNA:   3'- cACUA----UUGGCCgAAgUCUA-----UGUGGCG- -5'
22850 5' -49.4 NC_005135.1 + 122880 0.66 0.998557
Target:  5'- gGUGAUGAgaCGGCgaCAGGUauGCACC-Ca -3'
miRNA:   3'- -CACUAUUg-GCCGaaGUCUA--UGUGGcG- -5'
22850 5' -49.4 NC_005135.1 + 96849 0.66 0.998557
Target:  5'- ----gAGCUGGCgcgaaAGGUugGCCGCc -3'
miRNA:   3'- cacuaUUGGCCGaag--UCUAugUGGCG- -5'
22850 5' -49.4 NC_005135.1 + 58912 0.67 0.997052
Target:  5'- aGUGAUuACUGGCUgaUC-GAUgGCGcCCGCg -3'
miRNA:   3'- -CACUAuUGGCCGA--AGuCUA-UGU-GGCG- -5'
22850 5' -49.4 NC_005135.1 + 106769 0.68 0.995218
Target:  5'- uUGAgugGACCGGUUuaauaucgaUguGAcagGCACCGCu -3'
miRNA:   3'- cACUa--UUGGCCGA---------AguCUa--UGUGGCG- -5'
22850 5' -49.4 NC_005135.1 + 86866 0.68 0.995218
Target:  5'- -cGAUAACUGuaUUUAGuuuaACGCCGCc -3'
miRNA:   3'- caCUAUUGGCcgAAGUCua--UGUGGCG- -5'
22850 5' -49.4 NC_005135.1 + 160105 0.68 0.993354
Target:  5'- uUGAUcgAACuCGGCgaaaucaucgaaUCGGAUACGCCGg -3'
miRNA:   3'- cACUA--UUG-GCCGa-----------AGUCUAUGUGGCg -5'
22850 5' -49.4 NC_005135.1 + 56057 0.68 0.992547
Target:  5'- aUGAUGauugcACCGGCUaCGGcaGCGCCGa -3'
miRNA:   3'- cACUAU-----UGGCCGAaGUCuaUGUGGCg -5'
22850 5' -49.4 NC_005135.1 + 142245 0.69 0.990187
Target:  5'- cUGAacUGACCaGCUUCGaaucuGAUACACCaGCc -3'
miRNA:   3'- cACU--AUUGGcCGAAGU-----CUAUGUGG-CG- -5'
22850 5' -49.4 NC_005135.1 + 57476 0.7 0.971704
Target:  5'- -gGAUGGCCGGUUaccCGGAaUGCAUCGUc -3'
miRNA:   3'- caCUAUUGGCCGAa--GUCU-AUGUGGCG- -5'
22850 5' -49.4 NC_005135.1 + 104700 0.7 0.971704
Target:  5'- -cGAUGACCGGUccuacuggcCAGGUauucGCACUGCg -3'
miRNA:   3'- caCUAUUGGCCGaa-------GUCUA----UGUGGCG- -5'
22850 5' -49.4 NC_005135.1 + 2237 0.71 0.958241
Target:  5'- -aGcgAACUGGUUUCaAGAU-CACCGCc -3'
miRNA:   3'- caCuaUUGGCCGAAG-UCUAuGUGGCG- -5'
22850 5' -49.4 NC_005135.1 + 43373 0.72 0.940938
Target:  5'- ---uUGACCGGCacaacgguaccUUCAGGUACugCGUc -3'
miRNA:   3'- cacuAUUGGCCG-----------AAGUCUAUGugGCG- -5'
22850 5' -49.4 NC_005135.1 + 78617 0.73 0.913579
Target:  5'- aGUGAuUGACCGGgUugcuaUCAGggGCAUCGCu -3'
miRNA:   3'- -CACU-AUUGGCCgA-----AGUCuaUGUGGCG- -5'
22850 5' -49.4 NC_005135.1 + 130744 0.73 0.907336
Target:  5'- -cGAUAucuACU-GCUUCAgGAUACGCCGCa -3'
miRNA:   3'- caCUAU---UGGcCGAAGU-CUAUGUGGCG- -5'
22850 5' -49.4 NC_005135.1 + 168021 1.12 0.009763
Target:  5'- gGUGAUAACCGGCUUCAGAUACACCGCc -3'
miRNA:   3'- -CACUAUUGGCCGAAGUCUAUGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.