miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22856 3' -49 NC_005137.2 + 81554 0.66 0.998338
Target:  5'- aCGCuCGUUGUUAAuAGccAAGCUCGCg -3'
miRNA:   3'- -GCGcGCAGUAGUUuUCu-UUCGAGCGg -5'
22856 3' -49 NC_005137.2 + 61416 0.66 0.998338
Target:  5'- aCGcCGCGUUcUCAAAcaugucGGGAcGUUUGCCg -3'
miRNA:   3'- -GC-GCGCAGuAGUUU------UCUUuCGAGCGG- -5'
22856 3' -49 NC_005137.2 + 95882 0.66 0.998338
Target:  5'- gCGCGUGUCAaaccuUCGGuguuGAccGCguuugCGCCa -3'
miRNA:   3'- -GCGCGCAGU-----AGUUuu--CUuuCGa----GCGG- -5'
22856 3' -49 NC_005137.2 + 31249 0.66 0.998338
Target:  5'- uCGCGCGgc--CAAAcaauuAGu--GCUCGCCa -3'
miRNA:   3'- -GCGCGCaguaGUUU-----UCuuuCGAGCGG- -5'
22856 3' -49 NC_005137.2 + 20192 0.66 0.998
Target:  5'- uGCGCGUCGgcgggcggcgUCGAuugcGAAAGCgcguaCGCUu -3'
miRNA:   3'- gCGCGCAGU----------AGUUuu--CUUUCGa----GCGG- -5'
22856 3' -49 NC_005137.2 + 42883 0.66 0.99777
Target:  5'- uCGCGUGUCcgUu---GAGGGCguguuuucacacgcgUCGCCg -3'
miRNA:   3'- -GCGCGCAGuaGuuuuCUUUCG---------------AGCGG- -5'
22856 3' -49 NC_005137.2 + 42382 0.66 0.997605
Target:  5'- aGCGCGUCAaguguugCAAGuu-GAGCUucggcggugcccCGCCg -3'
miRNA:   3'- gCGCGCAGUa------GUUUucuUUCGA------------GCGG- -5'
22856 3' -49 NC_005137.2 + 104690 0.66 0.997605
Target:  5'- aCGCGCGU-GUUAGAGuccAGCgCGCCg -3'
miRNA:   3'- -GCGCGCAgUAGUUUUcuuUCGaGCGG- -5'
22856 3' -49 NC_005137.2 + 108627 0.66 0.997605
Target:  5'- gGUGCGUaggGUUAAAGu---GCUCGCCu -3'
miRNA:   3'- gCGCGCAg--UAGUUUUcuuuCGAGCGG- -5'
22856 3' -49 NC_005137.2 + 107533 0.66 0.997562
Target:  5'- gCGUGCGUCAUUAaaAAAGAAgaaaacguugagcAGUcCGCa -3'
miRNA:   3'- -GCGCGCAGUAGU--UUUCUU-------------UCGaGCGg -5'
22856 3' -49 NC_005137.2 + 22827 0.66 0.997148
Target:  5'- uGCGCGUUGcCAAAcgcGAGGGCgggCGCg -3'
miRNA:   3'- gCGCGCAGUaGUUUu--CUUUCGa--GCGg -5'
22856 3' -49 NC_005137.2 + 91391 0.66 0.997148
Target:  5'- gGCG-GaCGUUgcGAGAAAGUUUGCCg -3'
miRNA:   3'- gCGCgCaGUAGuuUUCUUUCGAGCGG- -5'
22856 3' -49 NC_005137.2 + 39828 0.66 0.997148
Target:  5'- aCGcCGCGcCA-CGGAAGAAAGCgaguuuagCGCa -3'
miRNA:   3'- -GC-GCGCaGUaGUUUUCUUUCGa-------GCGg -5'
22856 3' -49 NC_005137.2 + 9925 0.66 0.997148
Target:  5'- uGCGCGUCAUCAAAcu---GC-CGUUu -3'
miRNA:   3'- gCGCGCAGUAGUUUucuuuCGaGCGG- -5'
22856 3' -49 NC_005137.2 + 23568 0.66 0.996945
Target:  5'- aCGUGCGUguUCuucccacGGCUCGUCg -3'
miRNA:   3'- -GCGCGCAguAGuuuucuuUCGAGCGG- -5'
22856 3' -49 NC_005137.2 + 52899 0.66 0.99662
Target:  5'- gGUGCGUCG-CAAGGGAAA-CU-GCCc -3'
miRNA:   3'- gCGCGCAGUaGUUUUCUUUcGAgCGG- -5'
22856 3' -49 NC_005137.2 + 31404 0.66 0.99662
Target:  5'- uGCGCGUCAcCAAccguGgcAGCUgcacgucgaCGCCg -3'
miRNA:   3'- gCGCGCAGUaGUUuu--CuuUCGA---------GCGG- -5'
22856 3' -49 NC_005137.2 + 5129 0.66 0.99662
Target:  5'- aCGCGCGcCGaCAAuuaaacuuGGAAGaaaUCGCCa -3'
miRNA:   3'- -GCGCGCaGUaGUUuu------CUUUCg--AGCGG- -5'
22856 3' -49 NC_005137.2 + 81806 0.67 0.996014
Target:  5'- uCGCGCGUCGcguaUCGAugugcccaccGAGAGCUUGaCg -3'
miRNA:   3'- -GCGCGCAGU----AGUUuu--------CUUUCGAGCgG- -5'
22856 3' -49 NC_005137.2 + 115925 0.67 0.996014
Target:  5'- aUGCGCGUUguggaauguGUCAAGAGugugGAAGCgguuagCGCg -3'
miRNA:   3'- -GCGCGCAG---------UAGUUUUC----UUUCGa-----GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.