miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22856 3' -49 NC_005137.2 + 61416 0.66 0.998338
Target:  5'- aCGcCGCGUUcUCAAAcaugucGGGAcGUUUGCCg -3'
miRNA:   3'- -GC-GCGCAGuAGUUU------UCUUuCGAGCGG- -5'
22856 3' -49 NC_005137.2 + 31404 0.66 0.99662
Target:  5'- uGCGCGUCAcCAAccguGgcAGCUgcacgucgaCGCCg -3'
miRNA:   3'- gCGCGCAGUaGUUuu--CuuUCGA---------GCGG- -5'
22856 3' -49 NC_005137.2 + 52899 0.66 0.99662
Target:  5'- gGUGCGUCG-CAAGGGAAA-CU-GCCc -3'
miRNA:   3'- gCGCGCAGUaGUUUUCUUUcGAgCGG- -5'
22856 3' -49 NC_005137.2 + 23568 0.66 0.996945
Target:  5'- aCGUGCGUguUCuucccacGGCUCGUCg -3'
miRNA:   3'- -GCGCGCAguAGuuuucuuUCGAGCGG- -5'
22856 3' -49 NC_005137.2 + 9925 0.66 0.997148
Target:  5'- uGCGCGUCAUCAAAcu---GC-CGUUu -3'
miRNA:   3'- gCGCGCAGUAGUUUucuuuCGaGCGG- -5'
22856 3' -49 NC_005137.2 + 39828 0.66 0.997148
Target:  5'- aCGcCGCGcCA-CGGAAGAAAGCgaguuuagCGCa -3'
miRNA:   3'- -GC-GCGCaGUaGUUUUCUUUCGa-------GCGg -5'
22856 3' -49 NC_005137.2 + 91391 0.66 0.997148
Target:  5'- gGCG-GaCGUUgcGAGAAAGUUUGCCg -3'
miRNA:   3'- gCGCgCaGUAGuuUUCUUUCGAGCGG- -5'
22856 3' -49 NC_005137.2 + 42382 0.66 0.997605
Target:  5'- aGCGCGUCAaguguugCAAGuu-GAGCUucggcggugcccCGCCg -3'
miRNA:   3'- gCGCGCAGUa------GUUUucuUUCGA------------GCGG- -5'
22856 3' -49 NC_005137.2 + 104690 0.66 0.997605
Target:  5'- aCGCGCGU-GUUAGAGuccAGCgCGCCg -3'
miRNA:   3'- -GCGCGCAgUAGUUUUcuuUCGaGCGG- -5'
22856 3' -49 NC_005137.2 + 5129 0.66 0.99662
Target:  5'- aCGCGCGcCGaCAAuuaaacuuGGAAGaaaUCGCCa -3'
miRNA:   3'- -GCGCGCaGUaGUUuu------CUUUCg--AGCGG- -5'
22856 3' -49 NC_005137.2 + 115925 0.67 0.996014
Target:  5'- aUGCGCGUUguggaauguGUCAAGAGugugGAAGCgguuagCGCg -3'
miRNA:   3'- -GCGCGCAG---------UAGUUUUC----UUUCGa-----GCGg -5'
22856 3' -49 NC_005137.2 + 81806 0.67 0.996014
Target:  5'- uCGCGCGUCGcguaUCGAugugcccaccGAGAGCUUGaCg -3'
miRNA:   3'- -GCGCGCAGU----AGUUuu--------CUUUCGAGCgG- -5'
22856 3' -49 NC_005137.2 + 95213 0.75 0.799635
Target:  5'- aCGCGUGUCGUgAAGGGcuAGCcaaUUGCCa -3'
miRNA:   3'- -GCGCGCAGUAgUUUUCuuUCG---AGCGG- -5'
22856 3' -49 NC_005137.2 + 93573 0.75 0.827234
Target:  5'- aCGCGcCGUCGUCGcAAAGAuaAGGCcucguugCGCCa -3'
miRNA:   3'- -GCGC-GCAGUAGU-UUUCU--UUCGa------GCGG- -5'
22856 3' -49 NC_005137.2 + 42444 0.73 0.876104
Target:  5'- cCGCGCGcaaUCAUCA--AGAAaauuuauAGCUaCGCCa -3'
miRNA:   3'- -GCGCGC---AGUAGUuuUCUU-------UCGA-GCGG- -5'
22856 3' -49 NC_005137.2 + 87321 0.73 0.90518
Target:  5'- aGCGCGUCG-CGAAAcGGcgcAGCUgGCCa -3'
miRNA:   3'- gCGCGCAGUaGUUUU-CUu--UCGAgCGG- -5'
22856 3' -49 NC_005137.2 + 37423 0.71 0.957606
Target:  5'- cCGCGCGUUuggAUCAGcguGAuuGC-CGCCg -3'
miRNA:   3'- -GCGCGCAG---UAGUUuu-CUuuCGaGCGG- -5'
22856 3' -49 NC_005137.2 + 12213 0.7 0.974297
Target:  5'- aCGCGCGcauguaacgcuUCAUCGcuGGAuuguAGGC-CGCCu -3'
miRNA:   3'- -GCGCGC-----------AGUAGUuuUCU----UUCGaGCGG- -5'
22856 3' -49 NC_005137.2 + 2176 0.68 0.990262
Target:  5'- gCGCGCGcuUCAUCAAGuuu-AGUUUGCg -3'
miRNA:   3'- -GCGCGC--AGUAGUUUucuuUCGAGCGg -5'
22856 3' -49 NC_005137.2 + 87945 0.67 0.995323
Target:  5'- uGCGCGUCA-CAAAuuGAcuuaacuGgUCGCCg -3'
miRNA:   3'- gCGCGCAGUaGUUUu-CUuu-----CgAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.