miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22856 3' -49 NC_005137.2 + 87945 0.67 0.995323
Target:  5'- uGCGCGUCA-CAAAuuGAcuuaacuGgUCGCCg -3'
miRNA:   3'- gCGCGCAGUaGUUUu-CUuu-----CgAGCGG- -5'
22856 3' -49 NC_005137.2 + 81806 0.67 0.996014
Target:  5'- uCGCGCGUCGcguaUCGAugugcccaccGAGAGCUUGaCg -3'
miRNA:   3'- -GCGCGCAGU----AGUUuu--------CUUUCGAGCgG- -5'
22856 3' -49 NC_005137.2 + 104349 0.67 0.994536
Target:  5'- gCGUGCGUCGUCGu------GUUCGCg -3'
miRNA:   3'- -GCGCGCAGUAGUuuucuuuCGAGCGg -5'
22856 3' -49 NC_005137.2 + 73908 0.67 0.992643
Target:  5'- aGgGCGUCAUCGuuuu--GGCgCGCCc -3'
miRNA:   3'- gCgCGCAGUAGUuuucuuUCGaGCGG- -5'
22856 3' -49 NC_005137.2 + 1452 0.69 0.984496
Target:  5'- -cCGCGUCAgaacgCAAAAGAuuuucaaugcgcgccAcaauGCUCGCCa -3'
miRNA:   3'- gcGCGCAGUa----GUUUUCU---------------Uu---CGAGCGG- -5'
22856 3' -49 NC_005137.2 + 88813 0.69 0.983722
Target:  5'- gCGCGCGUCGcgucccugUCGGcGGAcgcGAcGCUgGCCa -3'
miRNA:   3'- -GCGCGCAGU--------AGUUuUCU---UU-CGAgCGG- -5'
22856 3' -49 NC_005137.2 + 128391 0.69 0.980332
Target:  5'- aCGCGUGUUauuuaauugacguuuGUgCAAAAGAcuaAAGgUCGCCa -3'
miRNA:   3'- -GCGCGCAG---------------UA-GUUUUCU---UUCgAGCGG- -5'
22856 3' -49 NC_005137.2 + 69007 0.7 0.974297
Target:  5'- aGCGCGUgCAaacugacgAAGAGAuuGUUCGCCa -3'
miRNA:   3'- gCGCGCA-GUag------UUUUCUuuCGAGCGG- -5'
22856 3' -49 NC_005137.2 + 71 0.7 0.97374
Target:  5'- gCGCGCGUCGUCGuaccugccggcaaAAAGAAGGUcuucaauUUGUa -3'
miRNA:   3'- -GCGCGCAGUAGU-------------UUUCUUUCG-------AGCGg -5'
22856 3' -49 NC_005137.2 + 124605 0.7 0.971422
Target:  5'- aCGUGCGUCAUCGccGGucAGUUcacauucaacCGCCg -3'
miRNA:   3'- -GCGCGCAGUAGUuuUCuuUCGA----------GCGG- -5'
22856 3' -49 NC_005137.2 + 68008 0.67 0.995323
Target:  5'- gGCGCcgcaccauggGUCcgCcgaAAAAGAAAGCguugUCGCCg -3'
miRNA:   3'- gCGCG----------CAGuaG---UUUUCUUUCG----AGCGG- -5'
22856 3' -49 NC_005137.2 + 127621 0.67 0.995323
Target:  5'- uCGCGCGUCAcgcaCAAcacAGGGuguuugcGCUCGUCu -3'
miRNA:   3'- -GCGCGCAGUa---GUU---UUCUuu-----CGAGCGG- -5'
22856 3' -49 NC_005137.2 + 125894 1.13 0.00657
Target:  5'- gCGCGCGUCAUCAAAAGAAAGCUCGCCu -3'
miRNA:   3'- -GCGCGCAGUAGUUUUCUUUCGAGCGG- -5'
22856 3' -49 NC_005137.2 + 95882 0.66 0.998338
Target:  5'- gCGCGUGUCAaaccuUCGGuguuGAccGCguuugCGCCa -3'
miRNA:   3'- -GCGCGCAGU-----AGUUuu--CUuuCGa----GCGG- -5'
22856 3' -49 NC_005137.2 + 20192 0.66 0.998
Target:  5'- uGCGCGUCGgcgggcggcgUCGAuugcGAAAGCgcguaCGCUu -3'
miRNA:   3'- gCGCGCAGU----------AGUUuu--CUUUCGa----GCGG- -5'
22856 3' -49 NC_005137.2 + 42883 0.66 0.99777
Target:  5'- uCGCGUGUCcgUu---GAGGGCguguuuucacacgcgUCGCCg -3'
miRNA:   3'- -GCGCGCAGuaGuuuuCUUUCG---------------AGCGG- -5'
22856 3' -49 NC_005137.2 + 108627 0.66 0.997605
Target:  5'- gGUGCGUaggGUUAAAGu---GCUCGCCu -3'
miRNA:   3'- gCGCGCAg--UAGUUUUcuuuCGAGCGG- -5'
22856 3' -49 NC_005137.2 + 107533 0.66 0.997562
Target:  5'- gCGUGCGUCAUUAaaAAAGAAgaaaacguugagcAGUcCGCa -3'
miRNA:   3'- -GCGCGCAGUAGU--UUUCUU-------------UCGaGCGg -5'
22856 3' -49 NC_005137.2 + 22827 0.66 0.997148
Target:  5'- uGCGCGUUGcCAAAcgcGAGGGCgggCGCg -3'
miRNA:   3'- gCGCGCAGUaGUUUu--CUUUCGa--GCGg -5'
22856 3' -49 NC_005137.2 + 69669 0.67 0.996014
Target:  5'- aGCGCGUgc-CAGAAGA--GCUUGUCu -3'
miRNA:   3'- gCGCGCAguaGUUUUCUuuCGAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.