Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22856 | 3' | -49 | NC_005137.2 | + | 87945 | 0.67 | 0.995323 |
Target: 5'- uGCGCGUCA-CAAAuuGAcuuaacuGgUCGCCg -3' miRNA: 3'- gCGCGCAGUaGUUUu-CUuu-----CgAGCGG- -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 81806 | 0.67 | 0.996014 |
Target: 5'- uCGCGCGUCGcguaUCGAugugcccaccGAGAGCUUGaCg -3' miRNA: 3'- -GCGCGCAGU----AGUUuu--------CUUUCGAGCgG- -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 125894 | 1.13 | 0.00657 |
Target: 5'- gCGCGCGUCAUCAAAAGAAAGCUCGCCu -3' miRNA: 3'- -GCGCGCAGUAGUUUUCUUUCGAGCGG- -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 8923 | 0.74 | 0.844659 |
Target: 5'- uGUGUGUCGUCAAAGuGAcccGGC-CGCCg -3' miRNA: 3'- gCGCGCAGUAGUUUU-CUu--UCGaGCGG- -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 106773 | 0.7 | 0.96499 |
Target: 5'- gGCGagcacaguagauUGUCAgCAugGGGAGGCUUGCCa -3' miRNA: 3'- gCGC------------GCAGUaGUuuUCUUUCGAGCGG- -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 124605 | 0.7 | 0.971422 |
Target: 5'- aCGUGCGUCAUCGccGGucAGUUcacauucaacCGCCg -3' miRNA: 3'- -GCGCGCAGUAGUuuUCuuUCGA----------GCGG- -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 71 | 0.7 | 0.97374 |
Target: 5'- gCGCGCGUCGUCGuaccugccggcaaAAAGAAGGUcuucaauUUGUa -3' miRNA: 3'- -GCGCGCAGUAGU-------------UUUCUUUCG-------AGCGg -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 69007 | 0.7 | 0.974297 |
Target: 5'- aGCGCGUgCAaacugacgAAGAGAuuGUUCGCCa -3' miRNA: 3'- gCGCGCA-GUag------UUUUCUuuCGAGCGG- -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 128391 | 0.69 | 0.980332 |
Target: 5'- aCGCGUGUUauuuaauugacguuuGUgCAAAAGAcuaAAGgUCGCCa -3' miRNA: 3'- -GCGCGCAG---------------UA-GUUUUCU---UUCgAGCGG- -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 88813 | 0.69 | 0.983722 |
Target: 5'- gCGCGCGUCGcgucccugUCGGcGGAcgcGAcGCUgGCCa -3' miRNA: 3'- -GCGCGCAGU--------AGUUuUCU---UU-CGAgCGG- -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 1452 | 0.69 | 0.984496 |
Target: 5'- -cCGCGUCAgaacgCAAAAGAuuuucaaugcgcgccAcaauGCUCGCCa -3' miRNA: 3'- gcGCGCAGUa----GUUUUCU---------------Uu---CGAGCGG- -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 73908 | 0.67 | 0.992643 |
Target: 5'- aGgGCGUCAUCGuuuu--GGCgCGCCc -3' miRNA: 3'- gCgCGCAGUAGUuuucuuUCGaGCGG- -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 104349 | 0.67 | 0.994536 |
Target: 5'- gCGUGCGUCGUCGu------GUUCGCg -3' miRNA: 3'- -GCGCGCAGUAGUuuucuuuCGAGCGg -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 68008 | 0.67 | 0.995323 |
Target: 5'- gGCGCcgcaccauggGUCcgCcgaAAAAGAAAGCguugUCGCCg -3' miRNA: 3'- gCGCG----------CAGuaG---UUUUCUUUCG----AGCGG- -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 127621 | 0.67 | 0.995323 |
Target: 5'- uCGCGCGUCAcgcaCAAcacAGGGuguuugcGCUCGUCu -3' miRNA: 3'- -GCGCGCAGUa---GUU---UUCUuu-----CGAGCGG- -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 69669 | 0.67 | 0.996014 |
Target: 5'- aGCGCGUgc-CAGAAGA--GCUUGUCu -3' miRNA: 3'- gCGCGCAguaGUUUUCUuuCGAGCGG- -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 22827 | 0.66 | 0.997148 |
Target: 5'- uGCGCGUUGcCAAAcgcGAGGGCgggCGCg -3' miRNA: 3'- gCGCGCAGUaGUUUu--CUUUCGa--GCGg -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 107533 | 0.66 | 0.997562 |
Target: 5'- gCGUGCGUCAUUAaaAAAGAAgaaaacguugagcAGUcCGCa -3' miRNA: 3'- -GCGCGCAGUAGU--UUUCUU-------------UCGaGCGg -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 108627 | 0.66 | 0.997605 |
Target: 5'- gGUGCGUaggGUUAAAGu---GCUCGCCu -3' miRNA: 3'- gCGCGCAg--UAGUUUUcuuuCGAGCGG- -5' |
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22856 | 3' | -49 | NC_005137.2 | + | 42883 | 0.66 | 0.99777 |
Target: 5'- uCGCGUGUCcgUu---GAGGGCguguuuucacacgcgUCGCCg -3' miRNA: 3'- -GCGCGCAGuaGuuuuCUUUCG---------------AGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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