miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22856 3' -49 NC_005137.2 + 69007 0.7 0.974297
Target:  5'- aGCGCGUgCAaacugacgAAGAGAuuGUUCGCCa -3'
miRNA:   3'- gCGCGCA-GUag------UUUUCUuuCGAGCGG- -5'
22856 3' -49 NC_005137.2 + 69669 0.67 0.996014
Target:  5'- aGCGCGUgc-CAGAAGA--GCUUGUCu -3'
miRNA:   3'- gCGCGCAguaGUUUUCUuuCGAGCGG- -5'
22856 3' -49 NC_005137.2 + 73908 0.67 0.992643
Target:  5'- aGgGCGUCAUCGuuuu--GGCgCGCCc -3'
miRNA:   3'- gCgCGCAGUAGUuuucuuUCGaGCGG- -5'
22856 3' -49 NC_005137.2 + 74915 0.77 0.698261
Target:  5'- uGCGCGUCA-CAAAGGGuucgcacCUCGCCa -3'
miRNA:   3'- gCGCGCAGUaGUUUUCUuuc----GAGCGG- -5'
22856 3' -49 NC_005137.2 + 81554 0.66 0.998338
Target:  5'- aCGCuCGUUGUUAAuAGccAAGCUCGCg -3'
miRNA:   3'- -GCGcGCAGUAGUUuUCu-UUCGAGCGg -5'
22856 3' -49 NC_005137.2 + 81806 0.67 0.996014
Target:  5'- uCGCGCGUCGcguaUCGAugugcccaccGAGAGCUUGaCg -3'
miRNA:   3'- -GCGCGCAGU----AGUUuu--------CUUUCGAGCgG- -5'
22856 3' -49 NC_005137.2 + 87321 0.73 0.90518
Target:  5'- aGCGCGUCG-CGAAAcGGcgcAGCUgGCCa -3'
miRNA:   3'- gCGCGCAGUaGUUUU-CUu--UCGAgCGG- -5'
22856 3' -49 NC_005137.2 + 87945 0.67 0.995323
Target:  5'- uGCGCGUCA-CAAAuuGAcuuaacuGgUCGCCg -3'
miRNA:   3'- gCGCGCAGUaGUUUu-CUuu-----CgAGCGG- -5'
22856 3' -49 NC_005137.2 + 88813 0.69 0.983722
Target:  5'- gCGCGCGUCGcgucccugUCGGcGGAcgcGAcGCUgGCCa -3'
miRNA:   3'- -GCGCGCAGU--------AGUUuUCU---UU-CGAgCGG- -5'
22856 3' -49 NC_005137.2 + 91391 0.66 0.997148
Target:  5'- gGCG-GaCGUUgcGAGAAAGUUUGCCg -3'
miRNA:   3'- gCGCgCaGUAGuuUUCUUUCGAGCGG- -5'
22856 3' -49 NC_005137.2 + 93573 0.75 0.827234
Target:  5'- aCGCGcCGUCGUCGcAAAGAuaAGGCcucguugCGCCa -3'
miRNA:   3'- -GCGC-GCAGUAGU-UUUCU--UUCGa------GCGG- -5'
22856 3' -49 NC_005137.2 + 95213 0.75 0.799635
Target:  5'- aCGCGUGUCGUgAAGGGcuAGCcaaUUGCCa -3'
miRNA:   3'- -GCGCGCAGUAgUUUUCuuUCG---AGCGG- -5'
22856 3' -49 NC_005137.2 + 95882 0.66 0.998338
Target:  5'- gCGCGUGUCAaaccuUCGGuguuGAccGCguuugCGCCa -3'
miRNA:   3'- -GCGCGCAGU-----AGUUuu--CUuuCGa----GCGG- -5'
22856 3' -49 NC_005137.2 + 104349 0.67 0.994536
Target:  5'- gCGUGCGUCGUCGu------GUUCGCg -3'
miRNA:   3'- -GCGCGCAGUAGUuuucuuuCGAGCGg -5'
22856 3' -49 NC_005137.2 + 104690 0.66 0.997605
Target:  5'- aCGCGCGU-GUUAGAGuccAGCgCGCCg -3'
miRNA:   3'- -GCGCGCAgUAGUUUUcuuUCGaGCGG- -5'
22856 3' -49 NC_005137.2 + 106773 0.7 0.96499
Target:  5'- gGCGagcacaguagauUGUCAgCAugGGGAGGCUUGCCa -3'
miRNA:   3'- gCGC------------GCAGUaGUuuUCUUUCGAGCGG- -5'
22856 3' -49 NC_005137.2 + 107533 0.66 0.997562
Target:  5'- gCGUGCGUCAUUAaaAAAGAAgaaaacguugagcAGUcCGCa -3'
miRNA:   3'- -GCGCGCAGUAGU--UUUCUU-------------UCGaGCGg -5'
22856 3' -49 NC_005137.2 + 108627 0.66 0.997605
Target:  5'- gGUGCGUaggGUUAAAGu---GCUCGCCu -3'
miRNA:   3'- gCGCGCAg--UAGUUUUcuuuCGAGCGG- -5'
22856 3' -49 NC_005137.2 + 115925 0.67 0.996014
Target:  5'- aUGCGCGUUguggaauguGUCAAGAGugugGAAGCgguuagCGCg -3'
miRNA:   3'- -GCGCGCAG---------UAGUUUUC----UUUCGa-----GCGg -5'
22856 3' -49 NC_005137.2 + 124605 0.7 0.971422
Target:  5'- aCGUGCGUCAUCGccGGucAGUUcacauucaacCGCCg -3'
miRNA:   3'- -GCGCGCAGUAGUuuUCuuUCGA----------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.