miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22856 5' -56 NC_005137.2 + 85250 0.73 0.541503
Target:  5'- aUCGGCGuCGCUGUCgUCAGcggcguaacccuUGgCGCGGCu -3'
miRNA:   3'- -AGCUGC-GCGGCAG-AGUU------------ACaGCGCCG- -5'
22856 5' -56 NC_005137.2 + 48002 0.66 0.912181
Target:  5'- aUGACGCGCUcacaacUCgUCAAUGguaUCGCGGa -3'
miRNA:   3'- aGCUGCGCGGc-----AG-AGUUAC---AGCGCCg -5'
22856 5' -56 NC_005137.2 + 31198 0.66 0.912181
Target:  5'- cCGGCccGCGUCGccCUUguaccaGcgGUCGCGGCa -3'
miRNA:   3'- aGCUG--CGCGGCa-GAG------UuaCAGCGCCG- -5'
22856 5' -56 NC_005137.2 + 129980 0.66 0.906136
Target:  5'- cCGACuccagaagguaCGuuGUCUCGcgG-CGCGGCu -3'
miRNA:   3'- aGCUGc----------GCggCAGAGUuaCaGCGCCG- -5'
22856 5' -56 NC_005137.2 + 68393 0.66 0.899858
Target:  5'- -gGACGCGUCGgccgagcacaUCGAcuUGUaCGUGGCg -3'
miRNA:   3'- agCUGCGCGGCag--------AGUU--ACA-GCGCCG- -5'
22856 5' -56 NC_005137.2 + 56355 0.66 0.899858
Target:  5'- aCGACGCGguaacCCGUCgaccgCGAUGU--UGGCg -3'
miRNA:   3'- aGCUGCGC-----GGCAGa----GUUACAgcGCCG- -5'
22856 5' -56 NC_005137.2 + 71070 0.66 0.893349
Target:  5'- cUCGAUGCgaaauuGCUGcaaaUCAAUGUCG-GGCg -3'
miRNA:   3'- -AGCUGCG------CGGCag--AGUUACAGCgCCG- -5'
22856 5' -56 NC_005137.2 + 72805 0.66 0.877522
Target:  5'- gCGGCGCgcgcuGCCGUCUUGAUGUUuagcauguaaaugaGCGcGUa -3'
miRNA:   3'- aGCUGCG-----CGGCAGAGUUACAG--------------CGC-CG- -5'
22856 5' -56 NC_005137.2 + 114807 0.67 0.841672
Target:  5'- gCGcACGuCGUCGUCgucaGAUGUCauagGCGGCu -3'
miRNA:   3'- aGC-UGC-GCGGCAGag--UUACAG----CGCCG- -5'
22856 5' -56 NC_005137.2 + 18573 0.68 0.807848
Target:  5'- gCGAcCGCGCCGUUUCAA--UUGCGa- -3'
miRNA:   3'- aGCU-GCGCGGCAGAGUUacAGCGCcg -5'
22856 5' -56 NC_005137.2 + 44256 0.68 0.789043
Target:  5'- gUUGACGCGCaCGUaacguucCUCAAgagcGUUGCGcGCu -3'
miRNA:   3'- -AGCUGCGCG-GCA-------GAGUUa---CAGCGC-CG- -5'
22856 5' -56 NC_005137.2 + 31464 0.69 0.752539
Target:  5'- aCaACGCGuuGUCUU-GUG-CGCGGCa -3'
miRNA:   3'- aGcUGCGCggCAGAGuUACaGCGCCG- -5'
22856 5' -56 NC_005137.2 + 97431 0.69 0.742899
Target:  5'- -gGGCGCGgCGcaCUCAaaaacAUGUCGgGGCa -3'
miRNA:   3'- agCUGCGCgGCa-GAGU-----UACAGCgCCG- -5'
22856 5' -56 NC_005137.2 + 100049 0.7 0.703468
Target:  5'- gCGGCGCGCgGcgcgUUCAgcaugcuuuGUGcCGCGGCg -3'
miRNA:   3'- aGCUGCGCGgCa---GAGU---------UACaGCGCCG- -5'
22856 5' -56 NC_005137.2 + 51669 0.71 0.632491
Target:  5'- aCGgguGCGUGUCGUCgcugacgCAGuUGUUGCGGCa -3'
miRNA:   3'- aGC---UGCGCGGCAGa------GUU-ACAGCGCCG- -5'
22856 5' -56 NC_005137.2 + 123052 0.71 0.622285
Target:  5'- -gGGC-CGCCGg-UCGAgGUCGCGGCg -3'
miRNA:   3'- agCUGcGCGGCagAGUUaCAGCGCCG- -5'
22856 5' -56 NC_005137.2 + 5248 0.73 0.531614
Target:  5'- --cACGCGCCG-CUCGAaacgCGCGGCg -3'
miRNA:   3'- agcUGCGCGGCaGAGUUaca-GCGCCG- -5'
22856 5' -56 NC_005137.2 + 69670 0.66 0.906136
Target:  5'- gCG-CGUGCCagaagagcuuGUCUCAAUua-GCGGCg -3'
miRNA:   3'- aGCuGCGCGG----------CAGAGUUAcagCGCCG- -5'
22856 5' -56 NC_005137.2 + 109397 0.66 0.893349
Target:  5'- uUCGACGCGCUGggugUUCAAagugacUGaCGCGuuGCa -3'
miRNA:   3'- -AGCUGCGCGGCa---GAGUU------ACaGCGC--CG- -5'
22856 5' -56 NC_005137.2 + 37709 0.66 0.886613
Target:  5'- cUUGACGUcacGCCGUUUCAagGUagcaaaaaccgGCGGCu -3'
miRNA:   3'- -AGCUGCG---CGGCAGAGUuaCAg----------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.