Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 22857 | 3' | -51.8 | NC_005137.2 | + | 115270 | 0.67 | 0.958148 |
|
Target: 5'- gCUGGCGCC-GCGACcuUGGCgagCAGCg- -3' miRNA: 3'- -GGCCGUGGuCGUUGu-ACUGa--GUUGac -5' |
|||||||
| 22857 | 3' | -51.8 | NC_005137.2 | + | 124964 | 0.67 | 0.958148 |
|
Target: 5'- gCGGCGCCGGUGAUggGGCgcugcGCUGc -3' miRNA: 3'- gGCCGUGGUCGUUGuaCUGagu--UGAC- -5' |
|||||||
| 22857 | 3' | -51.8 | NC_005137.2 | + | 125017 | 0.67 | 0.958148 |
|
Target: 5'- aCCGGCgAUCGguuGCGGCGUGGCgcaggCAACg- -3' miRNA: 3'- -GGCCG-UGGU---CGUUGUACUGa----GUUGac -5' |
|||||||
| 22857 | 3' | -51.8 | NC_005137.2 | + | 90711 | 0.67 | 0.968309 |
|
Target: 5'- gCUGGUggugcguGCCAGCAACGUGAUgauucacgUUAACa- -3' miRNA: 3'- -GGCCG-------UGGUCGUUGUACUG--------AGUUGac -5' |
|||||||
| 22857 | 3' | -51.8 | NC_005137.2 | + | 68005 | 0.67 | 0.968624 |
|
Target: 5'- gCCGGCGCC-GCAcCAUGGgUCcGCc- -3' miRNA: 3'- -GGCCGUGGuCGUuGUACUgAGuUGac -5' |
|||||||
| 22857 | 3' | -51.8 | NC_005137.2 | + | 32199 | 0.66 | 0.971659 |
|
Target: 5'- gUCGGCGCaCGGCGGCGuuUGGCagaCGACa- -3' miRNA: 3'- -GGCCGUG-GUCGUUGU--ACUGa--GUUGac -5' |
|||||||
| 22857 | 3' | -51.8 | NC_005137.2 | + | 78073 | 0.66 | 0.974477 |
|
Target: 5'- gCCGGCACCGGCcACuUGuuUCAu--- -3' miRNA: 3'- -GGCCGUGGUCGuUGuACugAGUugac -5' |
|||||||
| 22857 | 3' | -51.8 | NC_005137.2 | + | 30804 | 0.66 | 0.982539 |
|
Target: 5'- aCGcGCACCAGCAACAcguuggGAgUgugcgcguuuaauacCAACUGa -3' miRNA: 3'- gGC-CGUGGUCGUUGUa-----CUgA---------------GUUGAC- -5' |
|||||||
| 22857 | 3' | -51.8 | NC_005137.2 | + | 71319 | 0.66 | 0.983735 |
|
Target: 5'- aCGGcCACgUAGCAACAUGAUaaGACa- -3' miRNA: 3'- gGCC-GUG-GUCGUUGUACUGagUUGac -5' |
|||||||
| 22857 | 3' | -51.8 | NC_005137.2 | + | 26561 | 0.66 | 0.977085 |
|
Target: 5'- gUGGCGCU-GCGGCGUG--UCGACUGc -3' miRNA: 3'- gGCCGUGGuCGUUGUACugAGUUGAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home