Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22857 | 3' | -51.8 | NC_005137.2 | + | 20575 | 0.68 | 0.949964 |
Target: 5'- aCCGaGgACCucGCGACAUGACcgUCGACg- -3' miRNA: 3'- -GGC-CgUGGu-CGUUGUACUG--AGUUGac -5' |
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22857 | 3' | -51.8 | NC_005137.2 | + | 121542 | 0.67 | 0.954179 |
Target: 5'- aCCGGCGCgaaAGCAccACGUGgcacaauaauuuGCUCAaaauGCUGg -3' miRNA: 3'- -GGCCGUGg--UCGU--UGUAC------------UGAGU----UGAC- -5' |
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22857 | 3' | -51.8 | NC_005137.2 | + | 115270 | 0.67 | 0.958148 |
Target: 5'- gCUGGCGCC-GCGACcuUGGCgagCAGCg- -3' miRNA: 3'- -GGCCGUGGuCGUUGu-ACUGa--GUUGac -5' |
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22857 | 3' | -51.8 | NC_005137.2 | + | 124964 | 0.67 | 0.958148 |
Target: 5'- gCGGCGCCGGUGAUggGGCgcugcGCUGc -3' miRNA: 3'- gGCCGUGGUCGUUGuaCUGagu--UGAC- -5' |
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22857 | 3' | -51.8 | NC_005137.2 | + | 125017 | 0.67 | 0.958148 |
Target: 5'- aCCGGCgAUCGguuGCGGCGUGGCgcaggCAACg- -3' miRNA: 3'- -GGCCG-UGGU---CGUUGUACUGa----GUUGac -5' |
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22857 | 3' | -51.8 | NC_005137.2 | + | 90711 | 0.67 | 0.968309 |
Target: 5'- gCUGGUggugcguGCCAGCAACGUGAUgauucacgUUAACa- -3' miRNA: 3'- -GGCCG-------UGGUCGUUGUACUG--------AGUUGac -5' |
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22857 | 3' | -51.8 | NC_005137.2 | + | 32199 | 0.66 | 0.971659 |
Target: 5'- gUCGGCGCaCGGCGGCGuuUGGCagaCGACa- -3' miRNA: 3'- -GGCCGUG-GUCGUUGU--ACUGa--GUUGac -5' |
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22857 | 3' | -51.8 | NC_005137.2 | + | 78073 | 0.66 | 0.974477 |
Target: 5'- gCCGGCACCGGCcACuUGuuUCAu--- -3' miRNA: 3'- -GGCCGUGGUCGuUGuACugAGUugac -5' |
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22857 | 3' | -51.8 | NC_005137.2 | + | 30804 | 0.66 | 0.982539 |
Target: 5'- aCGcGCACCAGCAACAcguuggGAgUgugcgcguuuaauacCAACUGa -3' miRNA: 3'- gGC-CGUGGUCGUUGUa-----CUgA---------------GUUGAC- -5' |
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22857 | 3' | -51.8 | NC_005137.2 | + | 22394 | 0.75 | 0.652065 |
Target: 5'- cCCuacGCACCGGCAACAUGGCgCGcCUGa -3' miRNA: 3'- -GGc--CGUGGUCGUUGUACUGaGUuGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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