miRNA display CGI


Results 21 - 30 of 30 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22857 3' -51.8 NC_005137.2 + 25487 0.69 0.907037
Target:  5'- aCGGUGCCAGCAGCcguGUGGCgCcGCUu -3'
miRNA:   3'- gGCCGUGGUCGUUG---UACUGaGuUGAc -5'
22857 3' -51.8 NC_005137.2 + 113880 0.7 0.879449
Target:  5'- gCUGGUGaCGGCAAUGUGGCUC-GCUGa -3'
miRNA:   3'- -GGCCGUgGUCGUUGUACUGAGuUGAC- -5'
22857 3' -51.8 NC_005137.2 + 101428 0.7 0.879449
Target:  5'- uUGGCACCAccucCAACGgcUGAUUCAAUUGg -3'
miRNA:   3'- gGCCGUGGUc---GUUGU--ACUGAGUUGAC- -5'
22857 3' -51.8 NC_005137.2 + 28897 0.7 0.864205
Target:  5'- gUGGCGUCGGUGAUAUGGCUUAugUGc -3'
miRNA:   3'- gGCCGUGGUCGUUGUACUGAGUugAC- -5'
22857 3' -51.8 NC_005137.2 + 87939 0.71 0.848055
Target:  5'- aCCGGUugC-GCGucACAaauUGACUUAACUGg -3'
miRNA:   3'- -GGCCGugGuCGU--UGU---ACUGAGUUGAC- -5'
22857 3' -51.8 NC_005137.2 + 64530 0.72 0.813273
Target:  5'- gUGcGCACCGGCAACGUuGAC-CAACg- -3'
miRNA:   3'- gGC-CGUGGUCGUUGUA-CUGaGUUGac -5'
22857 3' -51.8 NC_005137.2 + 32655 0.72 0.798529
Target:  5'- aCCGGCGCacaAGCGugacggugacguacgACAUGACgUCAACa- -3'
miRNA:   3'- -GGCCGUGg--UCGU---------------UGUACUG-AGUUGac -5'
22857 3' -51.8 NC_005137.2 + 95445 0.73 0.735795
Target:  5'- aUGGCGCCGGCGguGCGUGuCUUGACa- -3'
miRNA:   3'- gGCCGUGGUCGU--UGUACuGAGUUGac -5'
22857 3' -51.8 NC_005137.2 + 22394 0.75 0.652065
Target:  5'- cCCuacGCACCGGCAACAUGGCgCGcCUGa -3'
miRNA:   3'- -GGc--CGUGGUCGUUGUACUGaGUuGAC- -5'
22857 3' -51.8 NC_005137.2 + 123656 1.12 0.004051
Target:  5'- gCCGGCACCAGCAACAUGACUCAACUGg -3'
miRNA:   3'- -GGCCGUGGUCGUUGUACUGAGUUGAC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.