miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22859 5' -49.9 NC_005137.2 + 11062 0.66 0.994995
Target:  5'- uGCUugCGCGUguggcUGCCAacUUGCAACUGa -3'
miRNA:   3'- -CGGuaGCGCAa----ACGGU--AGUGUUGACa -5'
22859 5' -49.9 NC_005137.2 + 48058 0.66 0.994163
Target:  5'- uGCCG-CGCGU--GCCAUCuCGACg-- -3'
miRNA:   3'- -CGGUaGCGCAaaCGGUAGuGUUGaca -5'
22859 5' -49.9 NC_005137.2 + 20588 0.66 0.991708
Target:  5'- aCCGUCGCGcccgUUGCCAgcugcggaaacacCACGuCUGUa -3'
miRNA:   3'- cGGUAGCGCa---AACGGUa------------GUGUuGACA- -5'
22859 5' -49.9 NC_005137.2 + 41827 0.66 0.991471
Target:  5'- cGCCA-CGCGUUUGUUAgcgcuggugaggugCACGAUUGc -3'
miRNA:   3'- -CGGUaGCGCAAACGGUa-------------GUGUUGACa -5'
22859 5' -49.9 NC_005137.2 + 44327 0.66 0.990981
Target:  5'- gGCCAUgGCGacgUGCguUCAaguCGGCUGUu -3'
miRNA:   3'- -CGGUAgCGCaa-ACGguAGU---GUUGACA- -5'
22859 5' -49.9 NC_005137.2 + 3939 0.67 0.988193
Target:  5'- uCCAUCGCGUUuauuagUGCCAU-GCAugUa- -3'
miRNA:   3'- cGGUAGCGCAA------ACGGUAgUGUugAca -5'
22859 5' -49.9 NC_005137.2 + 55724 0.68 0.980661
Target:  5'- cGCCGUUGCcc--GCCGUUACAGCcGg -3'
miRNA:   3'- -CGGUAGCGcaaaCGGUAGUGUUGaCa -5'
22859 5' -49.9 NC_005137.2 + 87835 0.68 0.978314
Target:  5'- cGCUugCGCGUUUGUCAUUAUGACg-- -3'
miRNA:   3'- -CGGuaGCGCAAACGGUAGUGUUGaca -5'
22859 5' -49.9 NC_005137.2 + 93478 0.68 0.970014
Target:  5'- cGCCAgCGcCGUUUGCCGaaACAGCa-- -3'
miRNA:   3'- -CGGUaGC-GCAAACGGUagUGUUGaca -5'
22859 5' -49.9 NC_005137.2 + 20376 0.69 0.962993
Target:  5'- cGCCGUcggCGCGUUUgugcacgGCCGUCACcacggacaccAACUGg -3'
miRNA:   3'- -CGGUA---GCGCAAA-------CGGUAGUG----------UUGACa -5'
22859 5' -49.9 NC_005137.2 + 2245 0.69 0.951525
Target:  5'- cGCgAUCGCGUUuaccuuUGCgAUUACgGGCUGUg -3'
miRNA:   3'- -CGgUAGCGCAA------ACGgUAGUG-UUGACA- -5'
22859 5' -49.9 NC_005137.2 + 16776 0.7 0.926624
Target:  5'- cGgCAcCGCGUUUGCCAaCAC-GCUGg -3'
miRNA:   3'- -CgGUaGCGCAAACGGUaGUGuUGACa -5'
22859 5' -49.9 NC_005137.2 + 47562 0.7 0.926624
Target:  5'- gGCUggCGCGUacUUGCCAgugCACAGCa-- -3'
miRNA:   3'- -CGGuaGCGCA--AACGGUa--GUGUUGaca -5'
22859 5' -49.9 NC_005137.2 + 121804 1.11 0.00698
Target:  5'- uGCCAUCGCGUUUGCCAUCACAACUGUa -3'
miRNA:   3'- -CGGUAGCGCAAACGGUAGUGUUGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.