miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22860 3' -52.6 NC_005137.2 + 119015 1.09 0.00414
Target:  5'- aAGCCACGCCUGCCGAUAAAGCUAUCAa -3'
miRNA:   3'- -UCGGUGCGGACGGCUAUUUCGAUAGU- -5'
22860 3' -52.6 NC_005137.2 + 130052 0.78 0.400307
Target:  5'- aAGCCGCGCCUuauugcGCCGAUGAcgGGCgcugGUCu -3'
miRNA:   3'- -UCGGUGCGGA------CGGCUAUU--UCGa---UAGu -5'
22860 3' -52.6 NC_005137.2 + 86000 0.71 0.74815
Target:  5'- uGGCCGCGCCgGCCGAgcauaaauUGuuGCUAa-- -3'
miRNA:   3'- -UCGGUGCGGaCGGCU--------AUuuCGAUagu -5'
22860 3' -52.6 NC_005137.2 + 47613 0.69 0.873636
Target:  5'- aAGCCACGCCUGCaauucuaCGGcgUAGGGCa---- -3'
miRNA:   3'- -UCGGUGCGGACG-------GCU--AUUUCGauagu -5'
22860 3' -52.6 NC_005137.2 + 5989 0.69 0.842148
Target:  5'- cGCCACGCCgcaaccgaucGCCGGUGcGGC-AUCc -3'
miRNA:   3'- uCGGUGCGGa---------CGGCUAUuUCGaUAGu -5'
22860 3' -52.6 NC_005137.2 + 42997 0.68 0.90996
Target:  5'- uGGCCGCGCCgGCaaucccauuaucGAAGCUAUCc -3'
miRNA:   3'- -UCGGUGCGGaCGgcua--------UUUCGAUAGu -5'
22860 3' -52.6 NC_005137.2 + 98357 0.66 0.947367
Target:  5'- cGUCACGCUUgugcGCCGGUuuGGCgccGUCGc -3'
miRNA:   3'- uCGGUGCGGA----CGGCUAuuUCGa--UAGU- -5'
22860 3' -52.6 NC_005137.2 + 25743 0.66 0.963444
Target:  5'- cGGCCaggACGUUUGCCGAUAAA-CUAa-- -3'
miRNA:   3'- -UCGG---UGCGGACGGCUAUUUcGAUagu -5'
22860 3' -52.6 NC_005137.2 + 39586 0.66 0.951761
Target:  5'- cGCgACGCCUGCgCGuuUAAGGUauugGUCGg -3'
miRNA:   3'- uCGgUGCGGACG-GCu-AUUUCGa---UAGU- -5'
22860 3' -52.6 NC_005137.2 + 80728 0.66 0.947367
Target:  5'- gGGCCGCGaaaaaCUGaCCGc---GGCUAUCGg -3'
miRNA:   3'- -UCGGUGCg----GAC-GGCuauuUCGAUAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.