miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 3' -51 NC_005137.2 + 64550 0.68 0.952222
Target:  5'- cCAACGUGCGcACGUuaaGCGACACGUuuccuauUGAGa -3'
miRNA:   3'- -GUUGCGCGU-UGUA---CGUUGUGCG-------ACUU- -5'
22864 3' -51 NC_005137.2 + 66453 0.67 0.956812
Target:  5'- aAACGUGUcgcuuAACGUGCG-CACGUUGGu -3'
miRNA:   3'- gUUGCGCG-----UUGUACGUuGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 66858 0.7 0.896316
Target:  5'- aAACGCGCAGgGUGCGcuucCACGCa--- -3'
miRNA:   3'- gUUGCGCGUUgUACGUu---GUGCGacuu -5'
22864 3' -51 NC_005137.2 + 67370 0.69 0.9221
Target:  5'- gCGAUGCGCGACcgucgccGCGGCgGCGUUGAAu -3'
miRNA:   3'- -GUUGCGCGUUGua-----CGUUG-UGCGACUU- -5'
22864 3' -51 NC_005137.2 + 73302 0.67 0.964368
Target:  5'- -cACaCGCAGCAuuuuuUGCAGCGCGgaGAGc -3'
miRNA:   3'- guUGcGCGUUGU-----ACGUUGUGCgaCUU- -5'
22864 3' -51 NC_005137.2 + 73411 0.7 0.889206
Target:  5'- aAACGCuGCugcuaucuGCuUGCGGCGCGCUGGg -3'
miRNA:   3'- gUUGCG-CGu-------UGuACGUUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 81599 0.66 0.983311
Target:  5'- uGACGCgGCAGCAguaagcagggucgUGC-ACACGCcGGAa -3'
miRNA:   3'- gUUGCG-CGUUGU-------------ACGuUGUGCGaCUU- -5'
22864 3' -51 NC_005137.2 + 83210 0.66 0.979108
Target:  5'- gCAACGCGguGaAU-CAACACGUUGAc -3'
miRNA:   3'- -GUUGCGCguUgUAcGUUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 83291 0.67 0.970946
Target:  5'- aCAGCGCGgucaAACAggGCGACcCGCUGu- -3'
miRNA:   3'- -GUUGCGCg---UUGUa-CGUUGuGCGACuu -5'
22864 3' -51 NC_005137.2 + 84539 0.68 0.952652
Target:  5'- uCAACGCGUAcauaaugauGCuGUGCAACACGUcGGc -3'
miRNA:   3'- -GUUGCGCGU---------UG-UACGUUGUGCGaCUu -5'
22864 3' -51 NC_005137.2 + 90172 0.68 0.952222
Target:  5'- -cGCGUGCAACGcGUuacaauucucacaAACGCGCUGGu -3'
miRNA:   3'- guUGCGCGUUGUaCG-------------UUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 91190 0.66 0.983512
Target:  5'- cCGugGCGCGGCGUuugGUuGCACGCg--- -3'
miRNA:   3'- -GUugCGCGUUGUA---CGuUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 93570 0.76 0.594451
Target:  5'- gUggUGCGCGGCG-GCAAuCACGCUGAu -3'
miRNA:   3'- -GuuGCGCGUUGUaCGUU-GUGCGACUu -5'
22864 3' -51 NC_005137.2 + 93681 0.66 0.983512
Target:  5'- aGAUGCGCAACAgGCccaGCGCcGGAu -3'
miRNA:   3'- gUUGCGCGUUGUaCGuugUGCGaCUU- -5'
22864 3' -51 NC_005137.2 + 95888 0.67 0.964368
Target:  5'- -cACGgGCAugGUGCGuCGCGgUGAc -3'
miRNA:   3'- guUGCgCGUugUACGUuGUGCgACUu -5'
22864 3' -51 NC_005137.2 + 97103 0.66 0.976604
Target:  5'- aCAACGUGCGGguUGUAGCGuCGCa--- -3'
miRNA:   3'- -GUUGCGCGUUguACGUUGU-GCGacuu -5'
22864 3' -51 NC_005137.2 + 99298 0.67 0.960716
Target:  5'- aCGACGCG-AACGUGC-ACACGUcGGu -3'
miRNA:   3'- -GUUGCGCgUUGUACGuUGUGCGaCUu -5'
22864 3' -51 NC_005137.2 + 99619 0.69 0.903164
Target:  5'- uGACGCGCAACGUGCAAaucaACuCgGAc -3'
miRNA:   3'- gUUGCGCGUUGUACGUUg---UGcGaCUu -5'
22864 3' -51 NC_005137.2 + 100049 0.68 0.938591
Target:  5'- gCGGCGCGCGgcGCGUuCAGCAUGCUu-- -3'
miRNA:   3'- -GUUGCGCGU--UGUAcGUUGUGCGAcuu -5'
22864 3' -51 NC_005137.2 + 105081 0.68 0.933366
Target:  5'- --uCGCGCAACAUGCAAUG-GCUa-- -3'
miRNA:   3'- guuGCGCGUUGUACGUUGUgCGAcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.