miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 3' -51 NC_005137.2 + 26669 0.7 0.858241
Target:  5'- aCGACGaCGCAcgcACGUGCgaacguuugAugGCGCUGAAc -3'
miRNA:   3'- -GUUGC-GCGU---UGUACG---------UugUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 28047 0.68 0.952652
Target:  5'- aCGugGCGCGAC-----GCGCGCUGGGa -3'
miRNA:   3'- -GUugCGCGUUGuacguUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 30801 0.8 0.349167
Target:  5'- uCGACGCGCAcCA-GCAACACGUUGGGa -3'
miRNA:   3'- -GUUGCGCGUuGUaCGUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 30939 0.71 0.8499
Target:  5'- -cGCGCGCcGCG-GCAcaaaGCAUGCUGAAc -3'
miRNA:   3'- guUGCGCGuUGUaCGU----UGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 31450 0.7 0.866349
Target:  5'- gGACGUGUcggAACAaGCgAGCGCGCUGAc -3'
miRNA:   3'- gUUGCGCG---UUGUaCG-UUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 31590 0.72 0.775832
Target:  5'- aCAuCGCGacaAugAUGCAacGCACGCUGGAu -3'
miRNA:   3'- -GUuGCGCg--UugUACGU--UGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 31647 0.67 0.970946
Target:  5'- -cGCGCGCGGac-GCGAcCACGCUGu- -3'
miRNA:   3'- guUGCGCGUUguaCGUU-GUGCGACuu -5'
22864 3' -51 NC_005137.2 + 32373 0.76 0.572782
Target:  5'- cCAACGCGCAGCaAUGUAACAaauUGUUGAc -3'
miRNA:   3'- -GUUGCGCGUUG-UACGUUGU---GCGACUu -5'
22864 3' -51 NC_005137.2 + 32987 0.69 0.927869
Target:  5'- gCAGCGCcCGACGUGC---ACGCUGGc -3'
miRNA:   3'- -GUUGCGcGUUGUACGuugUGCGACUu -5'
22864 3' -51 NC_005137.2 + 35239 0.7 0.896316
Target:  5'- aAACGuCcCGACGUGCGACGCccGCUGAu -3'
miRNA:   3'- gUUGC-GcGUUGUACGUUGUG--CGACUu -5'
22864 3' -51 NC_005137.2 + 35518 0.72 0.785713
Target:  5'- gCGAUGCGCc-CGUGCGGCGCGCa--- -3'
miRNA:   3'- -GUUGCGCGuuGUACGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 40109 0.72 0.795437
Target:  5'- -cGCGCGCAACGUGCu-UACGCa--- -3'
miRNA:   3'- guUGCGCGUUGUACGuuGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 45449 0.67 0.964368
Target:  5'- gUAGCGgGCGGC--GCAGCACGCg--- -3'
miRNA:   3'- -GUUGCgCGUUGuaCGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 45529 0.66 0.981408
Target:  5'- --gUGCGUcACGUGCAGCAauCGaCUGAAc -3'
miRNA:   3'- guuGCGCGuUGUACGUUGU--GC-GACUU- -5'
22864 3' -51 NC_005137.2 + 46094 0.73 0.713856
Target:  5'- gGACGCG--ACGUGCAACACGCa--- -3'
miRNA:   3'- gUUGCGCguUGUACGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 46450 0.68 0.942087
Target:  5'- gAACGCGcCGACGuguUGCAcagcaucauuauguACGCGUUGAAc -3'
miRNA:   3'- gUUGCGC-GUUGU---ACGU--------------UGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 49687 0.67 0.964368
Target:  5'- uGGCGCGCGGCG-GUAACuACGCg--- -3'
miRNA:   3'- gUUGCGCGUUGUaCGUUG-UGCGacuu -5'
22864 3' -51 NC_005137.2 + 50842 0.66 0.976604
Target:  5'- aCAACGCGCAAacgGCGGCAaCGUUu-- -3'
miRNA:   3'- -GUUGCGCGUUguaCGUUGU-GCGAcuu -5'
22864 3' -51 NC_005137.2 + 51889 0.66 0.981408
Target:  5'- aAACGUguauaguuagaGCAGCGguUGCGACACGUgGAAa -3'
miRNA:   3'- gUUGCG-----------CGUUGU--ACGUUGUGCGaCUU- -5'
22864 3' -51 NC_005137.2 + 57353 0.69 0.9221
Target:  5'- uUAGCGCGCGAUucg-GACACGUUGAc -3'
miRNA:   3'- -GUUGCGCGUUGuacgUUGUGCGACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.