miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 3' -51 NC_005137.2 + 2281 0.67 0.964368
Target:  5'- aAACGCGaacacucuaagGGCGUGCAcgacgGCACGUUGGAa -3'
miRNA:   3'- gUUGCGCg----------UUGUACGU-----UGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 2485 0.71 0.82356
Target:  5'- -uAUGCGCcGCGUGCGGCAuggUGCUGGu -3'
miRNA:   3'- guUGCGCGuUGUACGUUGU---GCGACUu -5'
22864 3' -51 NC_005137.2 + 3439 0.69 0.927869
Target:  5'- --uCGCGCAGCAUuuGGCGCGCUu-- -3'
miRNA:   3'- guuGCGCGUUGUAcgUUGUGCGAcuu -5'
22864 3' -51 NC_005137.2 + 3600 0.66 0.979108
Target:  5'- aGACGCGCAACAguuUGCGACuCGa---- -3'
miRNA:   3'- gUUGCGCGUUGU---ACGUUGuGCgacuu -5'
22864 3' -51 NC_005137.2 + 6621 0.67 0.967776
Target:  5'- aCGACGCGCGcGCA-GCAugACGUUa-- -3'
miRNA:   3'- -GUUGCGCGU-UGUaCGUugUGCGAcuu -5'
22864 3' -51 NC_005137.2 + 7151 0.74 0.703184
Target:  5'- aAAUGCGCGGCGUGUAagccGCGCGCUc-- -3'
miRNA:   3'- gUUGCGCGUUGUACGU----UGUGCGAcuu -5'
22864 3' -51 NC_005137.2 + 9596 0.66 0.976604
Target:  5'- uCAACuaGcCAGCAUGCAGCGuCGCUu-- -3'
miRNA:   3'- -GUUGcgC-GUUGUACGUUGU-GCGAcuu -5'
22864 3' -51 NC_005137.2 + 9739 0.67 0.964368
Target:  5'- aUAACGUGCAccuGCAcuuguUGCcGCAUGUUGAGa -3'
miRNA:   3'- -GUUGCGCGU---UGU-----ACGuUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 11264 0.7 0.881838
Target:  5'- cCAGCgGCGCuGACGUccGCuACGCGCUGAc -3'
miRNA:   3'- -GUUG-CGCG-UUGUA--CGuUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 11857 0.67 0.970946
Target:  5'- -cAUGCGCAaucugugcggacACAUGUAauACGCGCUGc- -3'
miRNA:   3'- guUGCGCGU------------UGUACGU--UGUGCGACuu -5'
22864 3' -51 NC_005137.2 + 12212 0.71 0.814371
Target:  5'- -cACGCGC-GCAUGUAACGCuucaucGCUGGAu -3'
miRNA:   3'- guUGCGCGuUGUACGUUGUG------CGACUU- -5'
22864 3' -51 NC_005137.2 + 15095 0.68 0.950031
Target:  5'- aCAACGCGCAugGCAucguugauaaaauggUgGCAACACGCg--- -3'
miRNA:   3'- -GUUGCGCGU--UGU---------------A-CGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 16773 0.68 0.952652
Target:  5'- uGACG-GCAccGCGuuUGcCAACACGCUGGAu -3'
miRNA:   3'- gUUGCgCGU--UGU--AC-GUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 19591 0.66 0.983512
Target:  5'- gAACuGCGCGACAaGCugUACGCcGAAu -3'
miRNA:   3'- gUUG-CGCGUUGUaCGuuGUGCGaCUU- -5'
22864 3' -51 NC_005137.2 + 24002 0.69 0.903164
Target:  5'- --cUGCGCAGCGUuugcGCAAcCACGUUGAu -3'
miRNA:   3'- guuGCGCGUUGUA----CGUU-GUGCGACUu -5'
22864 3' -51 NC_005137.2 + 24603 0.72 0.765804
Target:  5'- uCAGCGUGUuGCAUGUuGCGCGUUGGc -3'
miRNA:   3'- -GUUGCGCGuUGUACGuUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 25509 0.66 0.981408
Target:  5'- aCAugGCGCcgucACGcucguUGCAACGCGCg--- -3'
miRNA:   3'- -GUugCGCGu---UGU-----ACGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 26130 0.67 0.967776
Target:  5'- uCGACGgGUgcugAGCAuUGCAACGCGCaaaUGAAa -3'
miRNA:   3'- -GUUGCgCG----UUGU-ACGUUGUGCG---ACUU- -5'
22864 3' -51 NC_005137.2 + 26301 0.75 0.649015
Target:  5'- -uACGCGUAcaACG-GCGGCGCGCUGGAc -3'
miRNA:   3'- guUGCGCGU--UGUaCGUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 26546 0.67 0.956812
Target:  5'- -cACGUGCAACAaGuCGugGCGCUGc- -3'
miRNA:   3'- guUGCGCGUUGUaC-GUugUGCGACuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.