miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 3' -51 NC_005137.2 + 130851 0.67 0.967776
Target:  5'- gAACGCGUugGACGcGCAGCccGCGcCUGAAu -3'
miRNA:   3'- gUUGCGCG--UUGUaCGUUG--UGC-GACUU- -5'
22864 3' -51 NC_005137.2 + 129985 0.66 0.976604
Target:  5'- gAGCGCGCugaaaGUGCGGCACugaaacggGUUGAAu -3'
miRNA:   3'- gUUGCGCGuug--UACGUUGUG--------CGACUU- -5'
22864 3' -51 NC_005137.2 + 129002 0.7 0.874217
Target:  5'- -uGCGcCGCAGCGUGCAcgagcuguGCACGCg--- -3'
miRNA:   3'- guUGC-GCGUUGUACGU--------UGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 119738 0.82 0.301899
Target:  5'- uCAGCGCGUAGCGgacGuCAGCGCGCUGGAg -3'
miRNA:   3'- -GUUGCGCGUUGUa--C-GUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 117593 0.68 0.943545
Target:  5'- uGACGgGCGACGUGU-ACGCuGUUGAu -3'
miRNA:   3'- gUUGCgCGUUGUACGuUGUG-CGACUu -5'
22864 3' -51 NC_005137.2 + 115739 0.66 0.976604
Target:  5'- gGACGCcaaggugcaacGCAACGUGCG-CGCGCg--- -3'
miRNA:   3'- gUUGCG-----------CGUUGUACGUuGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 112778 0.68 0.952652
Target:  5'- aCGACGCGCAcACA-GCAACACcGCc--- -3'
miRNA:   3'- -GUUGCGCGU-UGUaCGUUGUG-CGacuu -5'
22864 3' -51 NC_005137.2 + 112026 0.66 0.979108
Target:  5'- uGACGCGCugcGACGUGCucaucAACAUGCg--- -3'
miRNA:   3'- gUUGCGCG---UUGUACG-----UUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 110829 0.68 0.933366
Target:  5'- cCGACGCGCAAgA-GUcguGCGCGCUGu- -3'
miRNA:   3'- -GUUGCGCGUUgUaCGu--UGUGCGACuu -5'
22864 3' -51 NC_005137.2 + 109381 0.68 0.933366
Target:  5'- --uUGCGCAACAaaauaguuCGACGCGCUGGGu -3'
miRNA:   3'- guuGCGCGUUGUac------GUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 108737 0.66 0.981408
Target:  5'- aAACGCGCAGaCAaaCGACGCGCa--- -3'
miRNA:   3'- gUUGCGCGUU-GUacGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 106403 1.06 0.008996
Target:  5'- cCAACGCGCAACAUGCAACACGCUGAAc -3'
miRNA:   3'- -GUUGCGCGUUGUACGUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 105081 0.68 0.933366
Target:  5'- --uCGCGCAACAUGCAAUG-GCUa-- -3'
miRNA:   3'- guuGCGCGUUGUACGUUGUgCGAcuu -5'
22864 3' -51 NC_005137.2 + 100049 0.68 0.938591
Target:  5'- gCGGCGCGCGgcGCGUuCAGCAUGCUu-- -3'
miRNA:   3'- -GUUGCGCGU--UGUAcGUUGUGCGAcuu -5'
22864 3' -51 NC_005137.2 + 99619 0.69 0.903164
Target:  5'- uGACGCGCAACGUGCAAaucaACuCgGAc -3'
miRNA:   3'- gUUGCGCGUUGUACGUUg---UGcGaCUu -5'
22864 3' -51 NC_005137.2 + 99298 0.67 0.960716
Target:  5'- aCGACGCG-AACGUGC-ACACGUcGGu -3'
miRNA:   3'- -GUUGCGCgUUGUACGuUGUGCGaCUu -5'
22864 3' -51 NC_005137.2 + 97103 0.66 0.976604
Target:  5'- aCAACGUGCGGguUGUAGCGuCGCa--- -3'
miRNA:   3'- -GUUGCGCGUUguACGUUGU-GCGacuu -5'
22864 3' -51 NC_005137.2 + 95888 0.67 0.964368
Target:  5'- -cACGgGCAugGUGCGuCGCGgUGAc -3'
miRNA:   3'- guUGCgCGUugUACGUuGUGCgACUu -5'
22864 3' -51 NC_005137.2 + 93681 0.66 0.983512
Target:  5'- aGAUGCGCAACAgGCccaGCGCcGGAu -3'
miRNA:   3'- gUUGCGCGUUGUaCGuugUGCGaCUU- -5'
22864 3' -51 NC_005137.2 + 93570 0.76 0.594451
Target:  5'- gUggUGCGCGGCG-GCAAuCACGCUGAu -3'
miRNA:   3'- -GuuGCGCGUUGUaCGUU-GUGCGACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.