Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22864 | 3' | -51 | NC_005137.2 | + | 130851 | 0.67 | 0.967776 |
Target: 5'- gAACGCGUugGACGcGCAGCccGCGcCUGAAu -3' miRNA: 3'- gUUGCGCG--UUGUaCGUUG--UGC-GACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 129985 | 0.66 | 0.976604 |
Target: 5'- gAGCGCGCugaaaGUGCGGCACugaaacggGUUGAAu -3' miRNA: 3'- gUUGCGCGuug--UACGUUGUG--------CGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 129002 | 0.7 | 0.874217 |
Target: 5'- -uGCGcCGCAGCGUGCAcgagcuguGCACGCg--- -3' miRNA: 3'- guUGC-GCGUUGUACGU--------UGUGCGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 119738 | 0.82 | 0.301899 |
Target: 5'- uCAGCGCGUAGCGgacGuCAGCGCGCUGGAg -3' miRNA: 3'- -GUUGCGCGUUGUa--C-GUUGUGCGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 117593 | 0.68 | 0.943545 |
Target: 5'- uGACGgGCGACGUGU-ACGCuGUUGAu -3' miRNA: 3'- gUUGCgCGUUGUACGuUGUG-CGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 115739 | 0.66 | 0.976604 |
Target: 5'- gGACGCcaaggugcaacGCAACGUGCG-CGCGCg--- -3' miRNA: 3'- gUUGCG-----------CGUUGUACGUuGUGCGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 112778 | 0.68 | 0.952652 |
Target: 5'- aCGACGCGCAcACA-GCAACACcGCc--- -3' miRNA: 3'- -GUUGCGCGU-UGUaCGUUGUG-CGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 112026 | 0.66 | 0.979108 |
Target: 5'- uGACGCGCugcGACGUGCucaucAACAUGCg--- -3' miRNA: 3'- gUUGCGCG---UUGUACG-----UUGUGCGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 110829 | 0.68 | 0.933366 |
Target: 5'- cCGACGCGCAAgA-GUcguGCGCGCUGu- -3' miRNA: 3'- -GUUGCGCGUUgUaCGu--UGUGCGACuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 109381 | 0.68 | 0.933366 |
Target: 5'- --uUGCGCAACAaaauaguuCGACGCGCUGGGu -3' miRNA: 3'- guuGCGCGUUGUac------GUUGUGCGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 108737 | 0.66 | 0.981408 |
Target: 5'- aAACGCGCAGaCAaaCGACGCGCa--- -3' miRNA: 3'- gUUGCGCGUU-GUacGUUGUGCGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 106403 | 1.06 | 0.008996 |
Target: 5'- cCAACGCGCAACAUGCAACACGCUGAAc -3' miRNA: 3'- -GUUGCGCGUUGUACGUUGUGCGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 105081 | 0.68 | 0.933366 |
Target: 5'- --uCGCGCAACAUGCAAUG-GCUa-- -3' miRNA: 3'- guuGCGCGUUGUACGUUGUgCGAcuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 100049 | 0.68 | 0.938591 |
Target: 5'- gCGGCGCGCGgcGCGUuCAGCAUGCUu-- -3' miRNA: 3'- -GUUGCGCGU--UGUAcGUUGUGCGAcuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 99619 | 0.69 | 0.903164 |
Target: 5'- uGACGCGCAACGUGCAAaucaACuCgGAc -3' miRNA: 3'- gUUGCGCGUUGUACGUUg---UGcGaCUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 99298 | 0.67 | 0.960716 |
Target: 5'- aCGACGCG-AACGUGC-ACACGUcGGu -3' miRNA: 3'- -GUUGCGCgUUGUACGuUGUGCGaCUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 97103 | 0.66 | 0.976604 |
Target: 5'- aCAACGUGCGGguUGUAGCGuCGCa--- -3' miRNA: 3'- -GUUGCGCGUUguACGUUGU-GCGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 95888 | 0.67 | 0.964368 |
Target: 5'- -cACGgGCAugGUGCGuCGCGgUGAc -3' miRNA: 3'- guUGCgCGUugUACGUuGUGCgACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 93681 | 0.66 | 0.983512 |
Target: 5'- aGAUGCGCAACAgGCccaGCGCcGGAu -3' miRNA: 3'- gUUGCGCGUUGUaCGuugUGCGaCUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 93570 | 0.76 | 0.594451 |
Target: 5'- gUggUGCGCGGCG-GCAAuCACGCUGAu -3' miRNA: 3'- -GuuGCGCGUUGUaCGUU-GUGCGACUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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