miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 3' -51 NC_005137.2 + 95888 0.67 0.964368
Target:  5'- -cACGgGCAugGUGCGuCGCGgUGAc -3'
miRNA:   3'- guUGCgCGUugUACGUuGUGCgACUu -5'
22864 3' -51 NC_005137.2 + 64550 0.68 0.952222
Target:  5'- cCAACGUGCGcACGUuaaGCGACACGUuuccuauUGAGa -3'
miRNA:   3'- -GUUGCGCGU-UGUA---CGUUGUGCG-------ACUU- -5'
22864 3' -51 NC_005137.2 + 90172 0.68 0.952222
Target:  5'- -cGCGUGCAACGcGUuacaauucucacaAACGCGCUGGu -3'
miRNA:   3'- guUGCGCGUUGUaCG-------------UUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 16773 0.68 0.952652
Target:  5'- uGACG-GCAccGCGuuUGcCAACACGCUGGAu -3'
miRNA:   3'- gUUGCgCGU--UGU--AC-GUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 28047 0.68 0.952652
Target:  5'- aCGugGCGCGAC-----GCGCGCUGGGa -3'
miRNA:   3'- -GUugCGCGUUGuacguUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 84539 0.68 0.952652
Target:  5'- uCAACGCGUAcauaaugauGCuGUGCAACACGUcGGc -3'
miRNA:   3'- -GUUGCGCGU---------UG-UACGUUGUGCGaCUu -5'
22864 3' -51 NC_005137.2 + 9739 0.67 0.964368
Target:  5'- aUAACGUGCAccuGCAcuuguUGCcGCAUGUUGAGa -3'
miRNA:   3'- -GUUGCGCGU---UGU-----ACGuUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 45449 0.67 0.964368
Target:  5'- gUAGCGgGCGGC--GCAGCACGCg--- -3'
miRNA:   3'- -GUUGCgCGUUGuaCGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 49687 0.67 0.964368
Target:  5'- uGGCGCGCGGCG-GUAACuACGCg--- -3'
miRNA:   3'- gUUGCGCGUUGUaCGUUG-UGCGacuu -5'
22864 3' -51 NC_005137.2 + 117593 0.68 0.943545
Target:  5'- uGACGgGCGACGUGU-ACGCuGUUGAu -3'
miRNA:   3'- gUUGCgCGUUGUACGuUGUG-CGACUu -5'
22864 3' -51 NC_005137.2 + 100049 0.68 0.938591
Target:  5'- gCGGCGCGCGgcGCGUuCAGCAUGCUu-- -3'
miRNA:   3'- -GUUGCGCGU--UGUAcGUUGUGCGAcuu -5'
22864 3' -51 NC_005137.2 + 110829 0.68 0.933366
Target:  5'- cCGACGCGCAAgA-GUcguGCGCGCUGu- -3'
miRNA:   3'- -GUUGCGCGUUgUaCGu--UGUGCGACuu -5'
22864 3' -51 NC_005137.2 + 46094 0.73 0.713856
Target:  5'- gGACGCG--ACGUGCAACACGCa--- -3'
miRNA:   3'- gUUGCGCguUGUACGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 24603 0.72 0.765804
Target:  5'- uCAGCGUGUuGCAUGUuGCGCGUUGGc -3'
miRNA:   3'- -GUUGCGCGuUGUACGuUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 31590 0.72 0.775832
Target:  5'- aCAuCGCGacaAugAUGCAacGCACGCUGGAu -3'
miRNA:   3'- -GUuGCGCg--UugUACGU--UGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 40109 0.72 0.795437
Target:  5'- -cGCGCGCAACGUGCu-UACGCa--- -3'
miRNA:   3'- guUGCGCGUUGUACGuuGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 12212 0.71 0.814371
Target:  5'- -cACGCGC-GCAUGUAACGCuucaucGCUGGAu -3'
miRNA:   3'- guUGCGCGuUGUACGUUGUG------CGACUU- -5'
22864 3' -51 NC_005137.2 + 2485 0.71 0.82356
Target:  5'- -uAUGCGCcGCGUGCGGCAuggUGCUGGu -3'
miRNA:   3'- guUGCGCGuUGUACGUUGU---GCGACUu -5'
22864 3' -51 NC_005137.2 + 26669 0.7 0.858241
Target:  5'- aCGACGaCGCAcgcACGUGCgaacguuugAugGCGCUGAAc -3'
miRNA:   3'- -GUUGC-GCGU---UGUACG---------UugUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 11264 0.7 0.881838
Target:  5'- cCAGCgGCGCuGACGUccGCuACGCGCUGAc -3'
miRNA:   3'- -GUUG-CGCG-UUGUA--CGuUGUGCGACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.